View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19629_low_1 (Length: 317)

Name: NF19629_low_1
Description: NF19629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19629_low_1
NF19629_low_1
[»] chr3 (5 HSPs)
chr3 (85-171)||(12225470-12225555)
chr3 (241-299)||(12225341-12225400)
chr3 (109-156)||(31138412-31138460)
chr3 (87-156)||(8075780-8075849)
chr3 (109-156)||(376641-376689)
[»] chr4 (5 HSPs)
chr4 (109-156)||(41520949-41520997)
chr4 (109-146)||(24063226-24063264)
chr4 (109-145)||(24540849-24540886)
chr4 (108-148)||(40847084-40847125)
chr4 (107-150)||(45289273-45289317)
[»] chr7 (3 HSPs)
chr7 (109-148)||(10242484-10242523)
chr7 (108-157)||(44106622-44106672)
chr7 (109-145)||(3948060-3948097)
[»] chr8 (3 HSPs)
chr8 (109-158)||(28084275-28084325)
chr8 (109-148)||(1877680-1877720)
chr8 (109-156)||(11771702-11771750)
[»] chr6 (3 HSPs)
chr6 (87-148)||(29069486-29069547)
chr6 (109-148)||(331904-331944)
chr6 (113-148)||(14552340-14552376)
[»] chr1 (2 HSPs)
chr1 (109-148)||(10356732-10356773)
chr1 (109-156)||(41142704-41142752)
[»] chr5 (1 HSPs)
chr5 (109-158)||(20125020-20125069)
[»] chr2 (1 HSPs)
chr2 (109-148)||(5168597-5168637)


Alignment Details
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 12225555 - 12225470
Alignment:
Q  85 gaccggagtttcaacctcagacttttgcatatattatgcatttctctatcaactgagttaagcttaggaggataatttatcttattt 171  Q
    ||||||||||| ||||||||||||| ||||||||||||| | ||| |||||||| ||||||||| ||||| ||||||||||||||||    
T  12225555 gaccggagtttgaacctcagacttt-gcatatattatgcctgtctgtatcaactaagttaagctcaggagaataatttatcttattt 12225470  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 12225400 - 12225341
Alignment:
Q  241 cgtggtatacatattaaattgttcgtatgagatacaatctattaagaacaa-ttaaatct 299  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12225400 cgtggtgtacatattaaattgttcgtatgagatacaatctattaagaacaagttaaatct 12225341  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 31138460 - 31138412
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagcttaggagga 156  Q
    |||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  31138460 ttgcatatattatgcattgtctctatcaactgagataagcttacgagga 31138412  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 8075849 - 8075780
Alignment:
Q  87 ccggagtttcaacctcagacttttgcatatattatgcatt-tctctatcaactgagttaagcttaggagga 156  Q
    |||| |||| |||||||||| || |||||||||||||||| ||||||| ||||||| |||||||| |||||    
T  8075849 ccggggtttgaacctcagacctt-gcatatattatgcattgtctctattaactgaggtaagcttacgagga 8075780  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 376689 - 376641
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagcttaggagga 156  Q
    |||||||||||||||||| |||||| |||| |||||||||||| |||||    
T  376689 ttgcatatattatgcattatctctaccaaccgagttaagcttacgagga 376641  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 41520997 - 41520949
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagcttaggagga 156  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  41520997 ttgcatatattatgcattgtctctaccaactgagttaagcttatgagga 41520949  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 24063226 - 24063264
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaag 146  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24063226 ttgcatatattatgcattgtctctatcaactgagttaag 24063264  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 24540886 - 24540849
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaa 145  Q
    |||||||||||||||||| |||||||||||||||||||    
T  24540886 ttgcatatattatgcattgtctctatcaactgagttaa 24540849  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 40847084 - 40847125
Alignment:
Q  108 tttgcatatattatgcatt-tctctatcaactgagttaagct 148  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  40847084 tttgcatatattatgtattgtctctatcaactgagttaagct 40847125  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 45289273 - 45289317
Alignment:
Q  107 ttttgcatatattatgcatt-tctctatcaactgagttaagctta 150  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||    
T  45289273 ttttgcatatattatgcattatctgtatcaactgagttaaactta 45289317  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 10242523 - 10242484
Alignment:
Q  109 ttgcatatattatgcatttctctatcaactgagttaagct 148  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  10242523 ttgcatatattatgcatttatctaccaactgagttaagct 10242484  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 44106672 - 44106622
Alignment:
Q  108 tttgcatatattatgcatt-tctctatcaactgagttaagcttaggaggat 157  Q
    ||||||||||||||| ||| ||||||||||||||||||| || ||||||||    
T  44106672 tttgcatatattatgtattgtctctatcaactgagttaaactcaggaggat 44106622  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 3948097 - 3948060
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaa 145  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3948097 ttgcatatattatgcattgtctctatcaactgagttaa 3948060  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 28084325 - 28084275
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagcttaggaggata 158  Q
    ||||||||||||| |||| |||||||||||||||||||||| | |||||||    
T  28084325 ttgcatatattattcattgtctctatcaactgagttaagctcacgaggata 28084275  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 1877680 - 1877720
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagct 148  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  1877680 ttgcatatattatgcattgtctatatcaactgagttaagct 1877720  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 11771750 - 11771702
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagcttaggagga 156  Q
    |||||||||||||| ||| ||||||||||||||| |||||||| |||||    
T  11771750 ttgcatatattatgtattgtctctatcaactgagctaagcttacgagga 11771702  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 29069547 - 29069486
Alignment:
Q  87 ccggagtttcaacctcagacttttgcatatattatgcatt-tctctatcaactgagttaagct 148  Q
    |||| |||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  29069547 ccggggtttgaacctcagactttt-catatattatgcattgtccctatcaactgagctaagct 29069486  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 331904 - 331944
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagct 148  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  331904 ttgcatatattatgcattgtctctaccaactgagttaagct 331944  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 14552376 - 14552340
Alignment:
Q  113 atatattatgcatt-tctctatcaactgagttaagct 148  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14552376 atatattatgcattatctctatcaactgagttaagct 14552340  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 10356732 - 10356773
Alignment:
Q  109 ttgcatatattatgcattt--ctctatcaactgagttaagct 148  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  10356732 ttgcatatattatgcatttttctctatcaactgagttaagct 10356773  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 41142704 - 41142752
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagcttaggagga 156  Q
    |||||||||||||||||| |||||||||||||||| ||| ||| |||||    
T  41142704 ttgcatatattatgcattgtctctatcaactgagtcaagtttacgagga 41142752  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 20125069 - 20125020
Alignment:
Q  109 ttgcatatattatgcatttctctatcaactgagttaagcttaggaggata 158  Q
    ||||||||||||||||||   ||||||| ||||||||||||| |||||||    
T  20125069 ttgcatatattatgcattgtcctatcaattgagttaagcttacgaggata 20125020  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 5168597 - 5168637
Alignment:
Q  109 ttgcatatattatgcatt-tctctatcaactgagttaagct 148  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  5168597 ttgcatatattatgcattatccctatcaactgagttaagct 5168637  T

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