View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19629_low_3 (Length: 250)

Name: NF19629_low_3
Description: NF19629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19629_low_3
NF19629_low_3
[»] chr4 (8 HSPs)
chr4 (14-250)||(5353728-5353964)
chr4 (81-250)||(5400749-5400916)
chr4 (81-250)||(5378074-5378243)
chr4 (81-250)||(5424484-5424653)
chr4 (130-250)||(5347213-5347333)
chr4 (135-199)||(5501645-5501709)
chr4 (133-211)||(5362668-5362746)
chr4 (136-250)||(5374002-5374120)
[»] chr5 (2 HSPs)
chr5 (81-250)||(20328249-20328418)
chr5 (136-250)||(20319648-20319765)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 5353964 - 5353728
Alignment:
Q  14 atattgcgtaaccgggaatgaaagaaataggcccttggagttggttataactaaaatcacctattaaaaggttagaactgaaatttgaaacacttctctc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5353964 atattgcgtaaccgggaatgaaagaaataggcccttggagttggttataactaaaatcacctattaaaaggttagaactgaaatttgaaacacttctctc 5353865  T
Q  114 catacctaccaaatagttatgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattgggtattagtccttcaatcttgttctcagatatt 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5353864 catacctatcaaatagttatgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattgggtattagtccttcaatcttgttctcagatatt 5353765  T
Q  214 tgaagagctaataacgtggactggtttctcaagaaac 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  5353764 tgaagagctaataacgtggactggtttctcaagaaac 5353728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 5400916 - 5400749
Alignment:
Q  81 aaggttagaactgaaatttgaaacacttctctccatacctaccaaatagttatgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattg 180  Q
    ||||||||||||||| ||||||| ||||   || | ||||  |||| | ||| |||||| |||||||||||||||||| ||||  ||||||||||| ||     
T  5400916 aaggttagaactgaagtttgaaaaactttcttcaaaacctgtcaaaaaattaagggaaatattcaaggtaatgagagattcaa--tgccaaatccactta 5400819  T
Q  181 ggtattagtccttcaatcttgttctcagatatttgaagagctaataacgtggactggtttctcaagaaac 250  Q
    ||||||||||||||||| ||||| |||||||  |||| || |||||  ||||||||||||||||||||||    
T  5400818 ggtattagtccttcaatgttgttgtcagataggtgaatagataatattgtggactggtttctcaagaaac 5400749  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 5378243 - 5378074
Alignment:
Q  81 aaggttagaactgaaatttgaaacacttctctccatacctaccaaatagttatgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattg 180  Q
    ||||||||||||||| || |||| ||||   |||| ||||  |||| | |||||||||||||||||| ||| |||||| ||||||||||||||||| ||     
T  5378243 aaggttagaactgaagttcgaaaaactttcttccaaacctgtcaaaaaattatgggaaagattcaagctaacgagagattcaagttgccaaatccactta 5378144  T
Q  181 ggtattagtccttcaatcttgttctcagatatttgaagagctaataacgtggactggtttctcaagaaac 250  Q
    |||||| |||||||||| ||||| ||||| |  |||| || |||||  ||||| |||||| |||||||||    
T  5378143 ggtattggtccttcaatgttgttgtcagacaagtgaatagataatattgtggattggtttttcaagaaac 5378074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 5424484 - 5424653
Alignment:
Q  81 aaggttagaactgaaatttgaaacacttctctccatacctaccaaatagttatgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattg 180  Q
    ||||||||||||||| || |||| ||||   |||| ||||   ||||| |||||||||||||||||| |||  ||||| ||||||||||||||||| ||     
T  5424484 aaggttagaactgaagttcgaaaaactttcttccaaacctgtaaaataattatgggaaagattcaagctaacaagagattcaagttgccaaatccactta 5424583  T
Q  181 ggtattagtccttcaatcttgttctcagatatttgaagagctaataacgtggactggtttctcaagaaac 250  Q
    |||||| |||||||||| || || ||||  || |||| || |||||  ||||| |||||| |||||||||    
T  5424584 ggtattggtccttcaatgttattgtcagccatgtgaatagataatattgtggattggtttttcaagaaac 5424653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 5347213 - 5347333
Alignment:
Q  130 ttatgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattgggtattagtccttcaatcttgttctcagatatttgaagagctaataacg 229  Q
    ||||| |||||||||||| ||| |||||| ||||||||||||||||| || |||||| |||||||||| ||||| ||||| |  |||| || |||||  |    
T  5347213 ttatgagaaagattcaagctaacgagagattcaagttgccaaatccacttaggtattggtccttcaatgttgttgtcagacaggtgaatagataatattg 5347312  T
Q  230 tggactggtttctcaagaaac 250  Q
    |||| |||||| |||||||||    
T  5347313 tggattggtttttcaagaaac 5347333  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 5501709 - 5501645
Alignment:
Q  135 ggaaagattcaaggtaatgagagaatcaagttgccaaatccaattgggtattagtccttcaatct 199  Q
    |||||||||||| |||| |||||| |||||||||||||||||||| |||||| ||||||||||||    
T  5501709 ggaaagattcaatgtaaggagagattcaagttgccaaatccaattaggtattggtccttcaatct 5501645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 5362746 - 5362668
Alignment:
Q  133 tgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattgggtattagtccttcaatcttgttctcagata 211  Q
    ||||||||||||||| ||||||||  |||||||| ||||||| |||| ||||||||||| || ||| |||| |||||||    
T  5362746 tgggaaagattcaagttaatgagattatcaagtttccaaatcgaattaggtattagtccatctatcatgttgtcagata 5362668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 5374120 - 5374002
Alignment:
Q  136 gaaagattcaaggtaatgagagaatcaagttgccaaat-ccaattgggtattagtccttcaatcttgttctcagatatttgaagagctaataac---gtg 231  Q
    |||||||||||| ||||||| ||| |||| |||||||| |||||| ||||||  ||||| ||| ||||| |||| ||  ||||||  |||||||   |||    
T  5374120 gaaagattcaagttaatgagtgaagcaagatgccaaatcccaattaggtattgatcctttaatattgttttcagttaaatgaagaaataataacaatgtg 5374021  T
Q  232 gactggtttctcaagaaac 250  Q
    |||||||||||||||||||    
T  5374020 gactggtttctcaagaaac 5374002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 20328418 - 20328249
Alignment:
Q  81 aaggttagaactgaaatttgaaacacttctctccatacctaccaaatagttatgggaaagattcaaggtaatgagagaatcaagttgccaaatccaattg 180  Q
    ||||||||||||||| || |||| ||||   |||| ||||   ||||| |||||||||||||||||| |||  ||||| ||||||||||||||||| ||     
T  20328418 aaggttagaactgaagttcgaaaaactttcttccaaacctgtaaaataattatgggaaagattcaagctaacaagagattcaagttgccaaatccactta 20328319  T
Q  181 ggtattagtccttcaatcttgttctcagatatttgaagagctaataacgtggactggtttctcaagaaac 250  Q
    |||||| |||||||||| ||||| ||||  || |||| || |||||  ||||| |||||| |||||||||    
T  20328318 ggtattggtccttcaatgttgttgtcagccatgtgaatagataatattgtggattggtttttcaagaaac 20328249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 250
Target Start/End: Complemental strand, 20319765 - 20319648
Alignment:
Q  136 gaaagattcaaggtaatgagagaatcaagttgccaaatccaattgggtattagtccttcaatcttgttctcagatatttgaagagctaataac---gtgg 232  Q
    |||||||||||| ||||||| ||| |||| |||||||||||||| ||||||  ||||| ||| ||||| |||| ||  ||||||  |||||||   ||||    
T  20319765 gaaagattcaagttaatgagtgaagcaagatgccaaatccaattaggtattgatcctttaatattgttttcagttaaatgaagaaataataacaatgtgg 20319666  T
Q  233 actggtttctcaagaaac 250  Q
    ||||||||||||||||||    
T  20319665 actggtttctcaagaaac 20319648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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