View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19629_low_4 (Length: 244)
Name: NF19629_low_4
Description: NF19629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19629_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 5353362 - 5353147
Alignment:
| Q |
13 |
agcacagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5353362 |
agcacagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaaatgatcagatggtaaattcccac |
5353263 |
T |
|
| Q |
113 |
ttaaatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaag |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5353262 |
ttaaatgattgagaaaaagagatatatatgtgaggtttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaag |
5353163 |
T |
|
| Q |
213 |
aagttgggtgagtttt |
228 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5353162 |
aagttgggtgagtttt |
5353147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 5425022 - 5425180
Alignment:
| Q |
16 |
acagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccactta |
115 |
Q |
| |
|
|||||||| || ||| | |||||||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||| ||||||||||| ||||||| |
|
|
| T |
5425022 |
acagatgatggcacactcccgttgaaagaattgaaccctaaattgatgctaacaagatttatgaggccctcaaaatgatttgatggtaaatttccactta |
5425121 |
T |
|
| Q |
116 |
aatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagt |
174 |
Q |
| |
|
||| ||| ||| || ||||||||| |||| || |||||||| | |||||||||||| |
|
|
| T |
5425122 |
aataatttcgaaggagggatatatatctgaggttcttggacatgcttaaagaagggagt |
5425180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 5392004 - 5391859
Alignment:
| Q |
37 |
ttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaatgattgagaaaaagtgata |
136 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| || |||||||| || |||||||||| ||| || |||||||||||||| || |||| |
|
|
| T |
5392004 |
ttgaaagaattgaaccctaaatcaatgcttacaagattttgaagcccctcgaaatggctggatggtaaatccccgctcaaatgattgagaaatagggata |
5391905 |
T |
|
| Q |
137 |
tatatgtgagatttttggacatattgaaagaagggagtggacctgt |
182 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5391904 |
gatatgtgagattcttcgacatattgaaagaagggagtggacctgt |
5391859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 5411449 - 5411261
Alignment:
| Q |
38 |
tgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaatgattgagaaaaagtgatat |
137 |
Q |
| |
|
||||| ||||||||||||||| ||| | |||||||| | || |||||||| || |||||||||| |||||| |||||||||||||| | |||| |
|
|
| T |
5411449 |
tgaaataattgaaccctaaatcaacgatgacaagatttttaagaccctcgaaatggctggatggtaaatccccactcaaatgattgagaaataaggataa |
5411350 |
T |
|
| Q |
138 |
atatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaagttgggtgagtt |
226 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||||| || ||||| ||||| | || | ||||| |||||||||||||| |
|
|
| T |
5411349 |
atatgtgaggttcttggacatattgaacgaagggagtggacctgtgaggttattggaagacatgtctaaataaacaagttgggtgagtt |
5411261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 5347705 - 5347860
Alignment:
| Q |
19 |
gatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaat |
118 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||| ||| |||||||| ||||||||||| || || | ||| |||||| |||||||||| |
|
|
| T |
5347705 |
gatgatggaacattcccattgaaagaattgaaccctaaattgatgctaacaagatttatgaggccctcaaaatggttggattttaaatttccacttaaat |
5347804 |
T |
|
| Q |
119 |
gattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagt |
174 |
Q |
| |
|
||||| ||| || |||| || | |||| ||||||||||| | |||||||||||| |
|
|
| T |
5347805 |
gattgcgaaggagggatagatgtctgaggtttttggacatgctcaaagaagggagt |
5347860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 226
Target Start/End: Original strand, 5469331 - 5469526
Alignment:
| Q |
31 |
tttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaatgattgagaaaaa |
130 |
Q |
| |
|
||||| |||||||||||||||||||||| | || |||||||| | |||||||| | || |||||||||| ||| || || ||||||||||| | |
|
|
| T |
5469331 |
tttcctttgaaagaattgaaccctaaatcaatactgacaagatttttaaggccctcataatggctggatggtaaatccccgctcaagtgattgagaaata |
5469430 |
T |
|
| Q |
131 |
gtgatatatatgtgagatttttggacatattgaaagaagggagtggacctgttagattattcgaagatagatcgagataaagaagttgggtgagtt |
226 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||||||||| |||||| || ||||| ||||| | || ||||||| |||||||||||||| |
|
|
| T |
5469431 |
aggatagatatgtgaggttcttggacatattgaaagaagggagtgtacctgtgaggttattggaagacacgtctagataaacaagttgggtgagtt |
5469526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 5400378 - 5400222
Alignment:
| Q |
18 |
agatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccacttaaa |
117 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||| |||| ||| |||||||| ||||||||||| || || | ||||||||||| | |||||| |
|
|
| T |
5400378 |
agatgatggcacattcccgttgaaagaattgaaccctaagttgatgctaacaagatttatgaggccctcaaaatggttggatggtaaatttgcccttaaa |
5400279 |
T |
|
| Q |
118 |
tgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagt |
174 |
Q |
| |
|
| ||| ||| || ||||||||| |||| || |||||||| | |||||||||||| |
|
|
| T |
5400278 |
taatttcgaaggagagatatatatatgaggttcttggacatgcttaaagaagggagt |
5400222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 5377705 - 5377547
Alignment:
| Q |
16 |
acagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccactta |
115 |
Q |
| |
|
|||||||| || |||| |||||||||||||||| || ||||||| ||| |||||||| ||||||||||| || | | ||||||||||| ||||||| |
|
|
| T |
5377705 |
acagatgatggcacatcaccgttgaaagaattgataccgaaattgatgctaacaagatttatgaggccctcaaaatagttggatggtaaatttccactta |
5377606 |
T |
|
| Q |
116 |
aatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagt |
174 |
Q |
| |
|
||| ||| || || |||| ||||||||| || |||||||| | |||||||||||| |
|
|
| T |
5377605 |
aataatttccaaggagggatagatatgtgaggttcttggacatgctcaaagaagggagt |
5377547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 20327880 - 20327723
Alignment:
| Q |
16 |
acagatgagggaacatttccgttgaaagaattgaaccctaaattgacgcttacaagattaatgaggccctcgaagtgatcagatggtaaattcccactta |
115 |
Q |
| |
|
|||||||| || ||| | |||||||||||||||||||||||||||| ||| |||||||| ||||||||||| || ||| ||||||||||| || ||| |
|
|
| T |
20327880 |
acagatgatggcacactcccgttgaaagaattgaaccctaaattgatgctaacaagatttatgaggccctcaaaaagattggatggtaaatt-tcaatta |
20327782 |
T |
|
| Q |
116 |
aatgattgagaaaaagtgatatatatgtgagatttttggacatattgaaagaagggagt |
174 |
Q |
| |
|
||| ||| ||| || ||||||||| |||| || |||||||| | |||||||||||| |
|
|
| T |
20327781 |
aataatttcgaaggagggatatatatctgaggttcttggacatgcttaaagaagggagt |
20327723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University