View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_high_12 (Length: 247)
Name: NF1962_1D_high_12
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2112896 - 2112664
Alignment:
| Q |
1 |
aaaagaaaatacatctttttcatttgtcaaatagaccgactaaatgcaattcaaccaaataaaacaaagcttctcacaaaaatgttttccgtcatgtcgc |
100 |
Q |
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| T |
2112896 |
aaaagaaaatacatatttt-catttgtcaaatagaccgactaaatgcaagtcaaccaaataaaacaaagcttctcacaaaaatgctttccgtcatgtcgc |
2112798 |
T |
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| Q |
101 |
aaccaacatgatggctgagcatgaacaaagctcaatttactaaaacactactaataggagtattttgctttccatttactttaaaatagagc-------g |
193 |
Q |
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| T |
2112797 |
aa-caaaatgatggctgagcatgaacaaagctcaatttactaaaacactgctaataggagtattttgctgtccatttactttaaaatagagcatataaag |
2112699 |
T |
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| Q |
194 |
ctgttatttattttaggattaattaagtttttagt |
228 |
Q |
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| T |
2112698 |
ctgttatttattttagggttaattaagtttttagt |
2112664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 28388767 - 28388795
Alignment:
| Q |
197 |
ttatttattttaggattaattaagttttt |
225 |
Q |
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| T |
28388767 |
ttatttattttaggattaattaagttttt |
28388795 |
T |
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