View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_high_3 (Length: 771)
Name: NF1962_1D_high_3
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 1 - 726
Target Start/End: Original strand, 43192895 - 43193620
Alignment:
| Q |
1 |
aataaacagatccatgaacaaaatagcataccaattcctcacatatcacaatgaaactaaccaaataaggaatcaattaatcagttgatttataatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43192895 |
aataaacagatccatgaacaaaatagcataccaattcctcacatatcacaatgaaactaaccaaataaggaatcaattaatcagttgatttataatcaat |
43192994 |
T |
|
| Q |
101 |
aaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataatagatagaaacagacctaacaacacgaacaggatagccttttcggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43192995 |
aaaaacagatctaacaaactaataagaaatcgatcagttgaattgaattcataataaataaaaacagacctaacaacacgaacaggatagccttttcggc |
43193094 |
T |
|
| Q |
201 |
aactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgcttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43193095 |
aactggttcgcaaagcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgcttcc |
43193194 |
T |
|
| Q |
301 |
ggtgtaaaggaaccactccccgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgccagca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43193195 |
agtgtaaaggaaccactccccgtgatcttcatcatctatataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgccagca |
43193294 |
T |
|
| Q |
401 |
acatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcagcaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43193295 |
acatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcagcaa |
43193394 |
T |
|
| Q |
501 |
ggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtgtaacaggt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43193395 |
ggattggtccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtgtaacaggt |
43193494 |
T |
|
| Q |
601 |
gtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagcttggccatacggatcgcaatc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43193495 |
gtcgggacgctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagcttggccatacggatcgcaatc |
43193594 |
T |
|
| Q |
701 |
gccaactgtgcgttgattcttggatt |
726 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43193595 |
gccaactgtgcgttgattcttggatt |
43193620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 121 - 727
Target Start/End: Complemental strand, 43194857 - 43194248
Alignment:
| Q |
121 |
aataagaaatcgatcagttgaattgaattcataatagatagaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaaagcctca |
220 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||| ||||| || | ||||||| |
|
|
| T |
43194857 |
aataaggaatcaatcaattgaattgaattcataatcaataaaaacggacctaacaacacgaacaggataaccttttcgacaactcagtctgagagcctca |
43194758 |
T |
|
| Q |
221 |
ttcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgcttccggtgtaaaggaaccactccc |
320 |
Q |
| |
|
||||| || ||||||| || ||||| ||||| |||||||| || |||||||| || |||||||| || || || ||||| ||||||||||||||||| | |
|
|
| T |
43194757 |
ttcatgttctcaaactgttgatcaaaagactgatttttgtttgtacgtttattaccgctgagatctctcccgccacttcctgtgtaaaggaaccactcac |
43194658 |
T |
|
| Q |
321 |
cgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgccagcaacatggggaaaatgagctcc |
420 |
Q |
| |
|
|||| || |||||||| ||||||||||| || || || ||||||||||||||||| | ||||||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
43194657 |
cgtggtcctcatcatcgacataaccacctgaaagtgcaacagattgagccccgtgtgtactctgaccagcaatgccagccacgtggggtaagtgagctcc |
43194558 |
T |
|
| Q |
421 |
ccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcagcaaggattggtccaaagtgatcc |
520 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |
|
|
| T |
43194557 |
ccattgcctacagtccatcctatcctcccatgtatcaccaacaagaaccccacggttccttgttggatcattctcagcaacaatcggtccaaaatgatct |
43194458 |
T |
|
| Q |
521 |
tttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtgtaacaggtgtcgggacgctcatcgttga |
620 |
Q |
| |
|
|| ||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| || ||| || || || |||||||| ||| |
|
|
| T |
43194457 |
ttcggaatggtcacaaatatctttccactgcaagcattagcctttcctgttttctttgctctctcagttgtataagcagtatcagggcgctcatcattgt |
43194358 |
T |
|
| Q |
621 |
gaacaacttgataattttttggagcagtgcttccaccgacactctct---gctctagctagcttggccatacggatcgcaatcgccaactgtgcgttgat |
717 |
Q |
| |
|
|||| |||||| ||||||| || | ||||| || |||| || | || |||| |||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43194357 |
caacactgtgataaacttttggaacactacttcctccaacaccaccttgcgaacttgctaccttggccatacgaatcgcaatcgccaactgtgcattgat |
43194258 |
T |
|
| Q |
718 |
tcttggattg |
727 |
Q |
| |
|
|| ||||||| |
|
|
| T |
43194257 |
tcgtggattg |
43194248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 710
Target Start/End: Complemental strand, 19106159 - 19105463
Alignment:
| Q |
17 |
aacaaaatagcataccaattcctcacatatc---acaatgaaactaaccaaataaggaatcaattaatcagttgatttataatcaataaaaacagatcta |
113 |
Q |
| |
|
||||||||| ||||||||||| || |||| | ||||||||||||| | |||| |||| |||| ||||| |||| || || |||||||||||| ||| |
|
|
| T |
19106159 |
aacaaaatatcataccaattcatcgcataactttacaatgaaactaagctaatatggaaacaatcaatcaattgaattt--attaataaaaacagaccta |
19106062 |
T |
|
| Q |
114 |
acaaactaataagaaatcgatcagttgaattgaattcataatagatagaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaa |
213 |
Q |
| |
|
||||||| ||| ||| |||||||||||| |||||||||| || ||| ||||||| ||||| ||||||| | |||||| |||||| || || |
|
|
| T |
19106061 |
acaaactggcaaggaattcatcagttgaatt-aattcataatgagtaaaaattgacctaaaaacacaaacaggacaacctttttggcaacatagtcttaa |
19105963 |
T |
|
| Q |
214 |
agcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgcttccggtgtaaaggaac |
313 |
Q |
| |
|
||||||| ||||||| ||||||| ||| || || |||||||||||||| || || || || ||||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
19105962 |
agcctcaatcatattctcaaactgctgatcgaaagactggtttttgttggtacgcttgttaccactgagatcccttccacaacttccagtataaaggaac |
19105863 |
T |
|
| Q |
314 |
cactccccgtgatcttcatcatctacataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgccagcaacatgggga---- |
409 |
Q |
| |
|
|| | || ||||| | ||||| || ||||| || || ||||| ||| |||| || || || | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
19105862 |
cattaaccatgatccttgtcatcaacgtaacctccagaaagagcaacaaattgtgcgccttgagtactcagaccaacaatcccagcaacatggggaccgg |
19105763 |
T |
|
| Q |
410 |
-aaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcagcaaggattggt |
508 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||| | ||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
19105762 |
aaaatgagctccctattgcctgcattccatcctatccccccaagtatcgccaacaagaacctcgtggttcctgttaggatcat--tcaacaaggattggt |
19105665 |
T |
|
| Q |
509 |
ccaaagtgatcctttggaatagtcacaaagatttttccactgcaagcattagcctttcctgttttccttgctctctcagtggtgtaacaggtgtcgggac |
608 |
Q |
| |
|
||||| |||| ||| |||| ||||| |||||||||||||||||||| | | |||| ||| |||| ||||||| || || | | |||| ||||| ||| |
|
|
| T |
19105664 |
ccaaaatgatattttagaattgtcacgaagatttttccactgcaagcttcaaccttccctattttttttgctctatcggtagagaaacaagtgtcaggaa |
19105565 |
T |
|
| Q |
609 |
gctcatcgttgagaacaacttgataattttttggagcagtgcttccaccgacactctctgctctagctagcttggccatacggatcgcaatcgccaactg |
708 |
Q |
| |
|
||||||| ||| ||||||| ||| | |||||||| ||| ||||||| || |||| ||| | ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
19105564 |
gctcatcattgtgaacaacatgaaatttttttggggcaatgcttcctccaacaccctcagatctagctagcttggccatacgaatcgcaattgccaactg |
19105465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 398 - 534
Target Start/End: Complemental strand, 53672118 - 53671982
Alignment:
| Q |
398 |
gcaacatggggaaaatgagctccccattgcctacattccatcctatcctcccaagtatcaccaacaagaaccccacggttcctattaggatcatactcag |
497 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
53672118 |
gcaatatggggaaaatgagcaccccattgcctgcattccatcctatccttccatttatcaccaacaagaaccccacgattcctagtaggatcattctcag |
53672019 |
T |
|
| Q |
498 |
caaggattggtccaaagtgatcctttggaatagtcac |
534 |
Q |
| |
|
| | ||| |||||||| ||||| |||||||||||||| |
|
|
| T |
53672018 |
ctacgatgggtccaaaatgatcttttggaatagtcac |
53671982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 53672345 - 53672258
Alignment:
| Q |
141 |
aattgaattcataatagatagaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaaagcctcattcatatt |
228 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
|
|
| T |
53672345 |
aattgaattcataatcaataaaaacatacctaacaacacgaacaggatagccttttcggcaactgagtcgcaaggcctcattcgtatt |
53672258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 53672383 - 53672310
Alignment:
| Q |
45 |
atcacaatgaaactaaccaaataaggaatcaattaatcagttg-atttataatcaataaaaacagatctaacaa |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| ||| ||| |||||||||||||||| | ||||||| |
|
|
| T |
53672383 |
atcacaatgaaactaaaataataaggaatcaatcaatcaattgaattcataatcaataaaaacatacctaacaa |
53672310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 30532598 - 30532553
Alignment:
| Q |
266 |
cgtttattcccactgagatcccttccaccgcttccggtgtaaagga |
311 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
30532598 |
cgtttcttaccactgagatcccttccaccacttccggtataaagga |
30532553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University