View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_high_6 (Length: 618)

Name: NF1962_1D_high_6
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_high_6
NF1962_1D_high_6
[»] chr8 (11 HSPs)
chr8 (14-597)||(32580618-32581196)
chr8 (491-552)||(14949799-14949860)
chr8 (473-552)||(35453721-35453800)
chr8 (479-529)||(12496577-12496627)
chr8 (489-552)||(31884503-31884566)
chr8 (506-552)||(18931396-18931442)
chr8 (490-544)||(26716542-26716596)
chr8 (473-527)||(27754556-27754610)
chr8 (480-552)||(3645914-3645986)
chr8 (495-531)||(14929296-14929332)
chr8 (487-531)||(31875678-31875722)
[»] chr5 (14 HSPs)
chr5 (23-136)||(8079581-8079694)
chr5 (256-375)||(8079237-8079356)
chr5 (487-531)||(6738526-6738570)
chr5 (489-552)||(26516207-26516270)
chr5 (480-552)||(20982233-20982305)
chr5 (476-531)||(31687921-31687976)
chr5 (506-552)||(7096225-7096271)
chr5 (489-531)||(40534103-40534145)
chr5 (479-552)||(38819673-38819746)
chr5 (492-552)||(10391265-10391325)
chr5 (504-552)||(13224353-13224401)
chr5 (487-531)||(13244600-13244644)
chr5 (479-552)||(16945079-16945154)
chr5 (479-531)||(41052789-41052841)
[»] chr6 (4 HSPs)
chr6 (473-552)||(2727954-2728032)
chr6 (479-528)||(31337922-31337971)
chr6 (479-552)||(33068659-33068732)
chr6 (489-552)||(2514611-2514674)
[»] chr2 (5 HSPs)
chr2 (473-550)||(33197339-33197416)
chr2 (479-545)||(2400055-2400121)
chr2 (480-528)||(9878061-9878109)
chr2 (488-528)||(34339031-34339071)
chr2 (479-531)||(43808475-43808527)
[»] chr4 (5 HSPs)
chr4 (489-529)||(24193494-24193534)
chr4 (489-552)||(485990-486053)
chr4 (473-552)||(30024593-30024672)
chr4 (504-558)||(4191663-4191717)
chr4 (473-546)||(54986315-54986388)
[»] scaffold0590 (1 HSPs)
scaffold0590 (489-552)||(1172-1235)
[»] scaffold0275 (1 HSPs)
scaffold0275 (489-552)||(2740-2803)
[»] chr3 (6 HSPs)
chr3 (473-552)||(43116526-43116605)
chr3 (489-548)||(41028953-41029012)
chr3 (502-552)||(44374742-44374792)
chr3 (508-553)||(8007792-8007837)
chr3 (489-530)||(29601187-29601228)
chr3 (479-531)||(29094280-29094332)
[»] chr7 (4 HSPs)
chr7 (490-550)||(9527190-9527250)
chr7 (492-561)||(45078205-45078273)
chr7 (473-529)||(28844379-28844435)
chr7 (473-552)||(30133944-30134021)


Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 14 - 597
Target Start/End: Original strand, 32580618 - 32581196
Alignment:
Q  14 tggacatcaagtgcgcaattcagcagcatagtattgatcaagagtgaaatcttgtttgccatttccagtttggttgtagagtctttgcctaaagcttgtg 113  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32580618 tggacattgagtgcgcaattcagcagcatagtattgatcaagagtgaaatcttgcttgccatttccagtttggttgtagagtctttgcctaaagcttgtg 32580717  T
Q  114 caccttgactttcctatagtgtgactccctaccaattgcataagatttgtttcagcatgttgttatgtatagtgtgatataaacatatgaactatattca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32580718 caccttgactttcctatagtgtgactccctaccaattgcataagatttgtttcagcatgttgttatgtatagtgtgatataaacatatgaactatattca 32580817  T
Q  214 aaataaaataatttaaatttatgtcacaagttcaaggagtgaaccagaaagagcaacaagatcaacaatgtcaagtccttgaagtttgaatttagttagg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32580818 aaataaaataatttaaatttatgtcacaagttcaaggagtgaaccagaaagagcaacaagatcaacaatgtcaagtccttgaagtttgaatttagttagg 32580917  T
Q  314 attgtctggaatgtgttgtttggggctggaatgttgttgttggaaccacttaaacttgcacctagtgagtctcttctgcctagagtcacttcccagtttg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32580918 attgtctggaatgtgttgtttggggctggaatgttgttgttggaaccacttaaacttgcacctagtgagtctcttctgcctagaggcacttcccagtttg 32581017  T
Q  414 gtccaccagcctacacataaaagggaatagtaatgtaagaatgtaactatataagtcttcaactaaatt-aaatgtttatagcataaacgcttatcatac 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32581018 gtccaccagcctacacataaaagggaatagtaatgtaagaatgtaactatataagtcttcaactaaattaaaatgtttatagcataaacgcttatcatac 32581117  T
Q  513 aagtacttatgtataagctgcatctataacaaaagataaagataaaatagcgcttatgaaaataaacgaaacacaatttatggac 597  Q
    |||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32581118 aagtacttatgtataagctgcatctataaca------aaagataaaatagcgcttatgaaaatatacgaaacacaatttatggac 32581196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 14949799 - 14949860
Alignment:
Q  491 atagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||| |||  ||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  14949799 atagcatcaacatttatcatacaagttcttatgtataagctacttctataacaaaagataaa 14949860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 35453800 - 35453721
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||| |||||| || ||||||||||| ||||| ||||| |||||||||| ||||| |||  |||| |||||||||||||    
T  35453800 caacttaattaagtgattatagcataagcgcttgtcatataagtacttatatataatctgtttctacaacaaaagataaa 35453721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 529
Target Start/End: Original strand, 12496577 - 12496627
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataag 529  Q
    |||||| |||||||||||| ||||||||||||| |||||| ||||||||||    
T  12496577 aattaagtgtttatagcattaacgcttatcatataagtacgtatgtataag 12496627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 31884503 - 31884566
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||| |||||||||||||||| | |||||||||| |   |||||||||||| |||||    
T  31884503 ttatagcataagcgcttatcatacaagtgcatatgtataagttatttctataacaaaatataaa 31884566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 18931442 - 18931396
Alignment:
Q  506 atcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||  |||||||||||||| | ||||||||||||||||||    
T  18931442 atcatacaagagcttatgtataagctacctctataacaaaagataaa 18931396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 544
Target Start/End: Complemental strand, 26716596 - 26716542
Alignment:
Q  490 tatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaa 544  Q
    |||||||||||| ||||| ||| |||| |||||||||||||| | ||||||||||    
T  26716596 tatagcataaacacttattatataagtgcttatgtataagctacttctataacaa 26716542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 527
Target Start/End: Complemental strand, 27754610 - 27754556
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtata 527  Q
    ||||| |||||| ||||||||| |||||||||||||||  |||| ||||||||||    
T  27754610 caacttaattaagtgtttatagtataaacgcttatcatttaagtgcttatgtata 27754556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 3645986 - 3645914
Alignment:
Q  480 attaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||||||||||||  | |||||||| |||| ||| ||||||||||   ||||||| |||| |||||    
T  3645986 attaaatgtttatagcataagtgtttatcatataagtgcttgtgtataagctatttctataagaaaatataaa 3645914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 531
Target Start/End: Complemental strand, 14929332 - 14929296
Alignment:
Q  495 cataaacgcttatcatacaagtacttatgtataagct 531  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  14929332 cataagcgcttatcatataagtacttatgtataagct 14929296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 31875722 - 31875678
Alignment:
Q  487 gtttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    ||||||||||||| ||||||||||| |||| ||||| ||||||||    
T  31875722 gtttatagcataagcgcttatcatataagtgcttatctataagct 31875678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 8079694 - 8079581
Alignment:
Q  23 agtgcgcaattcagcagcatagtattgatcaagagtgaaatcttgtttgccatttccagtttggttgtagagtctttgcctaaagcttgtgcaccttgac 122  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||   |||||||| ||||||||||||||||||||||| |||||||| ||||| | |||     
T  8079694 agtgcgcaattgagcagcatagttttggtcaagagtgaaatctgacttgccattcccagtttggttgtagagtctttgtctaaagctggtgcatcgtgaa 8079595  T
Q  123 tttcctatagtgtg 136  Q
    | ||||||||||||    
T  8079594 tctcctatagtgtg 8079581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 256 - 375
Target Start/End: Complemental strand, 8079356 - 8079237
Alignment:
Q  256 accagaaagagcaacaagatcaacaatgtcaagtccttgaagtttgaatttagttaggattgtctggaatgtgttgtttggggctggaatgttgttgttg 355  Q
    |||||| |||||||| ||||||||||||| |||||| | ||| |||||||| |||| ||| || |||||||| ||||||||||| ||||||||||||||     
T  8079356 accagatagagcaactagatcaacaatgttaagtcccttaagcttgaattttgttaagatggtttggaatgtattgtttggggcaggaatgttgttgttt 8079257  T
Q  356 gaaccacttaaacttgcacc 375  Q
    || |||||||  ||||||||    
T  8079256 gagccacttatgcttgcacc 8079237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 6738570 - 6738526
Alignment:
Q  487 gtttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||    
T  6738570 gtttatagcataaacacttatcatataagtacttatgtataagct 6738526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 26516207 - 26516270
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||   |||| |||||||||||||    
T  26516207 ttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaa 26516270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 552
Target Start/End: Complemental strand, 20982305 - 20982233
Alignment:
Q  480 attaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||| || |||||||||||  |||||||||| |||| ||||||||||||||   ||||||||||| ||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaa 20982233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 31687921 - 31687976
Alignment:
Q  476 ctaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    |||||||||||| ||||||||||  ||||||||||| |||| |||||| |||||||    
T  31687921 ctaaattaaatgcttatagcataggcgcttatcatataagtgcttatgaataagct 31687976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 7096271 - 7096225
Alignment:
Q  506 atcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||| ||||||||||||||   ||||||||||||||||||    
T  7096271 atcatacaagtgcttatgtataagctatttctataacaaaagataaa 7096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 531
Target Start/End: Original strand, 40534103 - 40534145
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||    
T  40534103 ttatagcataagcgcttatcatataaggacttatgtataagct 40534145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 38819746 - 38819673
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    |||||||| ||||| |||||| | ||||||||| |||  |||||||||| |||   ||||||||||||||||||    
T  38819746 aattaaatttttatggcataagcacttatcatataagggcttatgtatacgctatttctataacaaaagataaa 38819673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 492 - 552
Target Start/End: Original strand, 10391265 - 10391325
Alignment:
Q  492 tagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    |||||||||| ||||||||| |||| |||| |||||||||   | ||||||||||||||||    
T  10391265 tagcataaacacttatcatataagtgcttacgtataagctatttttataacaaaagataaa 10391325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 552
Target Start/End: Original strand, 13224353 - 13224401
Alignment:
Q  504 ttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    |||||||| |||| ||||||||||||||   ||||||||||||||||||    
T  13224353 ttatcatagaagtgcttatgtataagctatttctataacaaaagataaa 13224401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 13244644 - 13244600
Alignment:
Q  487 gtttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    ||||||||||||||||||||||||| |||| ||||  ||||||||    
T  13244644 gtttatagcataaacgcttatcatataagttcttacttataagct 13244600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 16945154 - 16945079
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatca--tacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    |||||| ||||||||||||||| ||||||||  || |||| ||||||||||||||   |||| || ||||||||||    
T  16945154 aattaagtgtttatagcataaaagcttatcatgtataagtgcttatgtataagctatttctacaagaaaagataaa 16945079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 41052789 - 41052841
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    |||||| || || |||||||||||||||||| ||| || ||||||||||||||    
T  41052789 aattaagtgcttgtagcataaacgcttatcagacaggtgcttatgtataagct 41052841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 2728032 - 2727954
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||| ||| || |||||||||||||   |||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  2728032 caacttaatgaagtgtttatagcatagt-gcttatcatataagtgcttatgtataagctgcttctataacaaaagataaa 2727954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 31337922 - 31337971
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataa 528  Q
    ||||||||||||||||||||| |||||||  || ||||||||||||||||    
T  31337922 aattaaatgtttatagcataagcgcttattgtataagtacttatgtataa 31337971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 552
Target Start/End: Complemental strand, 33068732 - 33068659
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    |||||| |||||||||||||| ||||||||| | || | |||||||||||| |   ||||||||||||||||||    
T  33068732 aattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaa 33068659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 2514611 - 2514674
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    |||||||||||| |||||||||  |||| ||||||||||||||   ||||||| ||||||||||    
T  2514611 ttatagcataaatgcttatcatgtaagtgcttatgtataagctatttctataataaaagataaa 2514674  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 550
Target Start/End: Complemental strand, 33197416 - 33197339
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagata 550  Q
    |||||||||||||   ||||| ||||||||||||||||| |||| ||||| ||||||||   ||||||||||||||||    
T  33197416 caactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaaaagata 33197339  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 545
Target Start/End: Original strand, 2400055 - 2400121
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaa 545  Q
    |||||||||||||| ||||||||  |||||||| |||| |||||||||||| ||  |||||||||||    
T  2400055 aattaaatgtttatggcataaacaattatcatataagtgcttatgtataagttgtttctataacaaa 2400121  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 528
Target Start/End: Complemental strand, 9878109 - 9878061
Alignment:
Q  480 attaaatgtttatagcataaacgcttatcatacaagtacttatgtataa 528  Q
    |||||||||| |||||||||||| | |||||| |||| |||||||||||    
T  9878109 attaaatgttgatagcataaacgttaatcatataagtgcttatgtataa 9878061  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 528
Target Start/End: Original strand, 34339031 - 34339071
Alignment:
Q  488 tttatagcataaacgcttatcatacaagtacttatgtataa 528  Q
    |||||||||||||| ||||||||| |||| |||||||||||    
T  34339031 tttatagcataaacacttatcatataagtgcttatgtataa 34339071  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 43808475 - 43808527
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    |||||| |||||||||||||| ||| ||||||| ||||  |||||||||||||    
T  43808475 aattaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagct 43808527  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 24193494 - 24193534
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataag 529  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  24193494 ttatagcataaacgcttatcatataagtacttatgtataag 24193534  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 485990 - 486053
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||| ||||||||||| |||| |||||||||| |||   |||| |||||||||||||    
T  485990 ttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaaaagataaa 486053  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 552
Target Start/End: Original strand, 30024593 - 30024672
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||| |||||| ||||||||| | || || |||||||| ||||||||||| ||||| |   ||||||||||||||||||    
T  30024593 caacttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttctataacaaaagataaa 30024672  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 558
Target Start/End: Original strand, 4191663 - 4191717
Alignment:
Q  504 ttatcatacaagtacttatgtataagctgcatctataacaaaagataaagataaa 558  Q
    |||||||| |||| ||||||||||||||   |||||||||||||||||| |||||    
T  4191663 ttatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaa 4191717  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 546
Target Start/End: Original strand, 54986315 - 54986388
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaa 546  Q
    ||||| || |||| |||||||||||||||||  |||||| ||||  |||||||||||||   ||||||||||||    
T  54986315 caacttaaataaaagtttatagcataaacgccaatcatataagtttttatgtataagctatttctataacaaaa 54986388  T

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Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 552
Target Start/End: Complemental strand, 1235 - 1172
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||||||  ||||||| |||| ||||||||||||||   ||||||||||||||||||    
T  1235 ttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaa 1172  T

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Target: scaffold0275 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 2740 - 2803
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||||||||||||  ||||||| |||| ||||||||||||||   ||||||||||||||||||    
T  2740 ttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaa 2803  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 43116605 - 43116526
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||| |||| | ||||||||||||||| | |||||||||||||  |||||| ||||||   ||||||||||||||||||    
T  43116605 caacttaatttagtgtttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaa 43116526  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 548
Target Start/End: Complemental strand, 41029012 - 41028953
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaaga 548  Q
    ||||||| |||| |||||||||| |||| ||||||||||||||   ||||||||||||||    
T  41029012 ttatagcttaaatgcttatcatataagtgcttatgtataagctatttctataacaaaaga 41028953  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 44374792 - 44374742
Alignment:
Q  502 gcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    |||||||||| |||| ||||||||||||||  |||| ||||||||||||||    
T  44374792 gcttatcatataagtgcttatgtataagctatatctttaacaaaagataaa 44374742  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 553
Target Start/End: Complemental strand, 8007837 - 8007792
Alignment:
Q  508 catacaagtacttatgtataagctgcatctataacaaaagataaag 553  Q
    ||||||||  |||||||||||||||  |||||||||||||||||||    
T  8007837 catacaagggcttatgtataagctgtttctataacaaaagataaag 8007792  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Complemental strand, 29601228 - 29601187
Alignment:
Q  489 ttatagcataaacgcttatcatacaagtacttatgtataagc 530  Q
    ||||||||||||||||||||| | || |||||||||||||||    
T  29601228 ttatagcataaacgcttatcacataactacttatgtataagc 29601187  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 29094280 - 29094332
Alignment:
Q  479 aattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagct 531  Q
    ||||||| | ||||||||||||| ||||||||| ||||  |||||||||||||    
T  29094280 aattaaacgcttatagcataaacacttatcatataagtgtttatgtataagct 29094332  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 550
Target Start/End: Complemental strand, 9527250 - 9527190
Alignment:
Q  490 tatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagata 550  Q
    ||||| |||||| |||||||||||||| ||||| |||| |||  |||||||||||||||||    
T  9527250 tatagtataaacacttatcatacaagtgcttatatatacgctatatctataacaaaagata 9527190  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 561
Target Start/End: Original strand, 45078205 - 45078273
Alignment:
Q  492 tagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaagataaaata 561  Q
    ||||||||||| |||||||| |||| ||||||||||||||   | |||||||||| ||||| ||||||||    
T  45078205 tagcataaacgtttatcatataagtgcttatgtataagctatttttataacaaaa-ataaaaataaaata 45078273  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 28844379 - 28844435
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataag 529  Q
    ||||| |||||| |||||||||||||| |||||||  || |||| ||||||||||||    
T  28844379 caacttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataag 28844435  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 552
Target Start/End: Original strand, 30133944 - 30134021
Alignment:
Q  473 caactaaattaaatgtttatagcataaacgcttatcatacaagtacttatgtataagctgcatctataacaaaagataaa 552  Q
    ||||| ||||||||| ||||||||||| ||||||||||  ||||  |||||||||||||   | || |||||||||||||    
T  30133944 caactcaattaaatgcttatagcataagcgcttatcat--aagtgtttatgtataagctatttttacaacaaaagataaa 30134021  T

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