View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_high_7 (Length: 501)
Name: NF1962_1D_high_7
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 43192823 - 43192339
Alignment:
| Q |
1 |
cagaattgagaaatgttggcgcaaagttggaatacaagtaagtatgattcttgtcttgtaataactaatcattacattaatcagttccagtaagtacatt |
100 |
Q |
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| T |
43192823 |
cagaattgagaaatgttggcgcaaagttggaatacaagtaagtatgattcttgttttgtaataactaatcattacattaatcagttccagtaagtacatt |
43192724 |
T |
|
| Q |
101 |
gagtgagacctaatggattatcagttgttaaagtttttcattgattgggaatcttttctgtgatagggtcataaggtctgcaggtatttgtttgtgaggt |
200 |
Q |
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| T |
43192723 |
gagtgagacctaatggattatcagttgttaaagtttttcattgattgggaatcttttctgtgatagggtcataaggtctgcaggtatttgtttgtgaggt |
43192624 |
T |
|
| Q |
201 |
gtgacaatgagccagctccatggactaggttgatttttgttcctcaacttttatttttcctattgtgtttgtactaatatatacaagtggaagtctggaa |
300 |
Q |
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| T |
43192623 |
gtgacaatgagccagctccatggacaaggttgatttttgttcctcaacttttatttttcctattgtgtttgtactaatatatacaagtggaagtctggaa |
43192524 |
T |
|
| Q |
301 |
cttgatcacttgaactctttttgttgatctgcagtgatttaactggagaccgtcctcgcccactacctacaattaaggagtttaagggtgcagttgatat |
400 |
Q |
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| T |
43192523 |
cttgatcacttgaactctttttgttgatctgcagtgatttaactggagaccgtcctcgcccactacctacaattaaggagtttaagggtgcagttgatat |
43192424 |
T |
|
| Q |
401 |
tactgaaagaaaggatgatccatcatgggacttcgatgtaagtagtgttgtctacttatatgcttttcttagatttattgatgtc |
485 |
Q |
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| T |
43192423 |
tactgaaagaaaggatgatccatcatgggacttcgatgtaagtagtgttgtctacttatatgcttttcttagatttattgatgtc |
43192339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 481
Target Start/End: Original strand, 43194991 - 43195476
Alignment:
| Q |
2 |
agaattgagaaatgttggcgcaaagttggaatacaagtaagtatgattcttgtcttgtaataactaatcattacattaatcagttccagtaagtacattg |
101 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || |||| || ||||| | |||| || || | ||||||||||| |
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| T |
43194991 |
agaattgagaaatgctggcgcaaaattggaatacaagtaagtatcattcttgt-ttctaattaccaatcactgcatttat----tctactaagtacattg |
43195085 |
T |
|
| Q |
102 |
agtgagacctaatggattatcagttgtt-aaagtttttcattgattgggaatcttttctgtgatagggtcataaggtctgcaggtatttgtttgtgaggt |
200 |
Q |
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| T |
43195086 |
agttataccgagttgattatcaattgttcaaagtttattgttgatgggga-tcttt-ctgtgatagggtcataaggtttgcaggtatttgtttgtgaggt |
43195183 |
T |
|
| Q |
201 |
gtgacaatgagccagctccatggactaggttgatttttgttcctcaacttttatttttcctat-----tgtgtttgtactaatatatacaagtggaagtc |
295 |
Q |
| |
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| T |
43195184 |
gtgacaatgagccagctccatggacaaggttggttttagttcctcaatttttatttttcctttgtatgtgtgtttgtactaatatatacaagtggacgtg |
43195283 |
T |
|
| Q |
296 |
tg-------gaacttgatcacttgaactctttttgttgatctgcagtgatttaactggagaccgtcctcgcccactacctacaattaaggagtttaaggg |
388 |
Q |
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| T |
43195284 |
ttacgtgtagaacttgatcacttgaattcattttgttgctctgtagtgatttatccggagaccgtccccgtccactacctataattaaggagtttaaagg |
43195383 |
T |
|
| Q |
389 |
tgcagttgatattactgaaagaaaggatgatccatcatgggacttcgatgtaagtagtgttgtctacttatatgcttttcttagatttattga |
481 |
Q |
| |
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| T |
43195384 |
tgcaattgacattactgaaagaaagggtgatccatcatgggactttgatgtaagtggtgttgtcttctgatctgcttttcttagatttcttga |
43195476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 456
Target Start/End: Original strand, 53672642 - 53672954
Alignment:
| Q |
141 |
ttgattgggaatcttttctgtgatagggtcataaggtctgcaggtatttgtttgtgaggtgtgacaatgagccagctccatggactaggttgattttt-g |
239 |
Q |
| |
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||||| |||||||||| ||||| ||||| | ||||| |||||||||||||||||||||||||||||||| ||||| || ||||| |||||| ||||| | |
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| T |
53672642 |
ttgatggggaatcttta-tgtgacagggtgagaaggtttgcaggtatttgtttgtgaggtgtgacaatgaaccagcgccttggacaaggttggtttttcg |
53672740 |
T |
|
| Q |
240 |
ttcctcaacttttatttttcctattgtgtttgtactaatatatacaagtggaagtctggaacttgatcacttgaactctttttgttgatctgcagtgatt |
339 |
Q |
| |
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||| |||| ||||| ||||||||| | || |||||| ||| | |||| ||| | || ||||||| |||| ||||||||||||| ||||||||| |
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| T |
53672741 |
ttcttcaattttta-ttttcctatgtttttagtacta--ataaaaaagttagagtattaaagttgatcatttgacttctttttgttgatgggcagtgatt |
53672837 |
T |
|
| Q |
340 |
taactggagaccgtcctcgcccactacctacaattaaggagtttaagggtgcagttgatattactgaaagaaaggatgatccatcatgggacttcgatgt |
439 |
Q |
| |
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|| ||||||| ||| || |||||||| || ||||||||| || |||||||||||||| |||||| || | ||||||||||||||||| ||||| |
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| T |
53672838 |
tatctggagattatccccgtacactaccttttatcgaggagtttagggatgcagttgatattattgaaaggaatggcgatccatcatgggactttgatgt |
53672937 |
T |
|
| Q |
440 |
aagtagtgttgtctact |
456 |
Q |
| |
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|||| ||||||||||| |
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| T |
53672938 |
aagtgatgttgtctact |
53672954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 19106386 - 19106438
Alignment:
| Q |
179 |
tgcaggtatttgtttgtgaggtgtgacaatgagccagctccatggactaggtt |
231 |
Q |
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| T |
19106386 |
tgcaggtatttgtttgtgaggtgtgacaatgagccagctccatggacaaggtt |
19106438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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