View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_high_9 (Length: 484)

Name: NF1962_1D_high_9
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_high_9
NF1962_1D_high_9
[»] chr4 (11 HSPs)
chr4 (99-456)||(31150704-31151061)
chr4 (204-396)||(31162086-31162276)
chr4 (207-405)||(31489046-31489244)
chr4 (215-407)||(31020316-31020508)
chr4 (215-407)||(31030197-31030389)
chr4 (216-402)||(31496404-31496590)
chr4 (231-452)||(31159734-31159955)
chr4 (216-402)||(31501574-31501760)
chr4 (207-413)||(31528969-31529175)
chr4 (208-308)||(31476558-31476658)
chr4 (308-402)||(31482303-31482397)
[»] chr6 (11 HSPs)
chr6 (211-320)||(33642147-33642256)
chr6 (209-408)||(31566566-31566765)
chr6 (211-333)||(33306927-33307049)
chr6 (231-317)||(13608607-13608693)
chr6 (215-402)||(33390518-33390705)
chr6 (211-402)||(33403052-33403243)
chr6 (211-383)||(33288016-33288188)
chr6 (297-404)||(33060082-33060189)
chr6 (168-205)||(12781883-12781920)
chr6 (355-404)||(33361083-33361132)
chr6 (200-244)||(12781930-12781974)
[»] chr2 (1 HSPs)
chr2 (211-404)||(17438135-17438328)
[»] chr8 (1 HSPs)
chr8 (231-284)||(6472955-6473008)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 99 - 456
Target Start/End: Original strand, 31150704 - 31151061
Alignment:
Q  99 ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150704 ctctcttttgattaattaatatagtttctcgaggacgtcgtgatcaattactaaatttatgtgtcaaagcaaagctttaaaatttgcacatgtaagtgca 31150803  T
Q  199 tcaataaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagtttt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150804 tcaataaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagtttt 31150903  T
Q  299 gttggaatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150904 gttggaatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacg 31151003  T
Q  399 ttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaact 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151004 ttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaact 31151061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 204 - 396
Target Start/End: Original strand, 31162086 - 31162276
Alignment:
Q  204 aaggaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttgg 303  Q
    |||||||||||||||||||| ||| |||||||| |||||||  ||||| ||||||||  | |||||||||||||||||||| || ||| ||| |||||||    
T  31162086 aaggaagattacttacttatgacgcacatcccaaccagaga--ttggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttgg 31162183  T
Q  304 aatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaaca 396  Q
    ||||||| |||||||||    ||||||||| |||||  |||||||||||||| || |||  | ||||||||||||||||| ||||||||||||    
T  31162184 aatctttgttcatgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaaacaggcagaaca 31162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 207 - 405
Target Start/End: Complemental strand, 31489244 - 31489046
Alignment:
Q  207 gaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaat 306  Q
    ||||||| ||||||||| ||| | |||||| || |||| |||  ||||||||||||| ||||||||||||||||| || |  | | |||  |||||||||    
T  31489244 gaagattgcttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctttgtaccacatgagagtcatgttggaat 31489145  T
Q  307 ctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttcca 405  Q
     ||| ||||||||| |  ||||||||| | |||  ||||||||||| || |||||| || |||||||||||||| || ||||| ||||||||| |||||    
T  31489144 gtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttcca 31489046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 407
Target Start/End: Original strand, 31020316 - 31020508
Alignment:
Q  215 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 314  Q
    ||||||||| ||| | |||||| ||||||| |||  ||||||||||||| ||||||||||| ||||| || |  | | |||  ||||||||| ||| |||    
T  31020316 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttc 31020415  T
Q  315 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccaga 407  Q
    |||||| |  ||||||||| | |||  ||||||||||| || |||||| || |||||||||||||| || ||||| ||||||||| |||||||    
T  31020416 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccaga 31020508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 407
Target Start/End: Original strand, 31030197 - 31030389
Alignment:
Q  215 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 314  Q
    ||||||||| ||| | |||||| ||||||| |||  ||||||||||||| ||||||||||| ||||| || |  | | | |  ||||||||| ||| |||    
T  31030197 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttc 31030296  T
Q  315 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccaga 407  Q
    |||||| |  ||||||||| | |||  ||||||||||| || |||||| || |||||||||||||| || ||||| ||||||||| |||||||    
T  31030297 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccaga 31030389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 216 - 402
Target Start/End: Complemental strand, 31496590 - 31496404
Alignment:
Q  216 ttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttca 315  Q
    |||||||| | ||| |||||| ||||||||||  || |||||| | || |||||||||||||||||||| || | | ||| |||||||||||||| ||||    
T  31496590 ttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttca 31496491  T
Q  316 tgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgtttt 402  Q
    |||||  | || |||||| |||||  |||  |||| | |||||||   || || |||||||||||||| |||||||||||| |||||    
T  31496490 tgtttgacaaatgcttcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaaacaggcagaacatgtttt 31496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 452
Target Start/End: Original strand, 31159734 - 31159955
Alignment:
Q  231 atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttcatgtttagctaaggct 330  Q
    |||||| |||||||||||||| |||||||| ||   | ||||||||||||| || || ||  | |  ||||||||||||||||| ||||| || | ||||    
T  31159734 atcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatctttcttcgtgtttggcaagggct 31159833  T
Q  331 tcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgc 430  Q
    ||  |||||| ||| ||||||| || |||||| || ||||||||||||||||| | ||| ||||||||  ||||||| | ||||  ||  ||||| |||     
T  31159834 tctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaacacgagttccagaaacttgactgcagtgaaggatgt 31159933  T
Q  431 actccaattctcgcaaacacca 452  Q
    | ||||| |||||||| |||||    
T  31159934 attccaactctcgcaagcacca 31159955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 402
Target Start/End: Complemental strand, 31501760 - 31501574
Alignment:
Q  216 ttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttca 315  Q
    |||||||| ||||| ||| || ||||| |||  ||| ||||||||||| ||||||||||||||| |||| || | | ||| |||||||||| ||| ||||    
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  316 tgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgtttt 402  Q
    |||||  | || ||||||  ||||   ||  |||| | ||||||| | |  ||||||||||||||||| |||||||||||| |||||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaaacaggcagaacatgtttt 31501574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 413
Target Start/End: Original strand, 31528969 - 31529175
Alignment:
Q  207 gaagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaat 306  Q
    ||||| ||||||||||| ||||| |||||| || || |||||||| ||||| || || |||  |||||||| |||||  |  |||  || ||||| ||||    
T  31528969 gaagaatacttacttatcacgtatatcccaacctgaaagattggcgacttgcgtgagagctgtcctccatccttgcaggacctcagtgtcttgtttgaat 31529068  T
Q  307 ctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccag 406  Q
    ||||| |||||||  || || ||||    |||||  ||  |||| | ||||||||| || ||||||||||||||||| ||||| ||||||||||||||||    
T  31529069 ctttcctcatgttgggcaaatgcttttttataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccag 31529168  T
Q  407 atagttg 413  Q
    | |||||    
T  31529169 aaagttg 31529175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 31476658 - 31476558
Alignment:
Q  208 aagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatc 307  Q
    ||||||| |||||||| ||||| |||||| |||||||||| ||| ||||||||||| ||| ||||||||| | |||| |||| | ||| ||||| |||||    
T  31476658 aagattatttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatcgtagcaccatttgagagtcttgtttgaatc 31476559  T
Q  308 t 308  Q
    |    
T  31476558 t 31476558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 402
Target Start/End: Complemental strand, 31482397 - 31482303
Alignment:
Q  308 tttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgtttt 402  Q
    ||||||||||||| || ||||||| ||||||||  ||  |||| | ||| ||||| |||||||  ||||||||||| |||| | |||||||||||    
T  31482397 tttcttcatgtttggcaaaggctttagcataactcccactttgctttcgtacctcagatggattgacatcatagaaaacagtccgaacacgtttt 31482303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 33642256 - 33642147
Alignment:
Q  211 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 310  Q
    ||||||||||||| ||||| |||||| ||||||| | |  |||||||| | || |||||||||||||||  ||| |||| ||||| ||||||||||||||    
T  33642256 attacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatcttt 33642157  T
Q  311 cttcatgttt 320  Q
     |||||||||    
T  33642156 gttcatgttt 33642147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 408
Target Start/End: Complemental strand, 31566765 - 31566566
Alignment:
Q  209 agattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatct 308  Q
    ||||||||||||||| ||||| |||||| ||| ||| | | ||||||||| | || ||||| |||||||||  ||| || | | ||| |||| |||||||    
T  31566765 agattacttacttatcacgtagatcccaaccaaagatactcgccacttgttttagagcttctctccatcttgacaccatctgagagtcttgtcggaatct 31566666  T
Q  309 ttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagat 408  Q
    || ||||||||| || || ||||||| ||||   ||  |||| | ||| ||||| || ||||||||||||||||| ||| | |||||| ||||| |||||    
T  31566665 ttgttcatgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatcaacatcatagaaaacaagaagaacatgtttttcagat 31566566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 33306927 - 33307049
Alignment:
Q  211 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 310  Q
    ||||||||||||| ||||| |||||| ||||||| | |  |||| ||| | || |||||||||||||||  ||| || ||||||| ||||||||||||||    
T  33306927 attacttacttatcacgtagatcccaaccagagatactccccacatgttttagagcttccctccatcttgacaccatctcaaagtcttgttggaatcttt 33307026  T
Q  311 cttcatgtttagctaaggcttca 333  Q
     |||||||||  | |||||||||    
T  33307027 gttcatgtttgacaaaggcttca 33307049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 13608693 - 13608607
Alignment:
Q  231 atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttcatg 317  Q
    |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||    || ||||||| || |||||||||||||||    
T  13608693 atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttgaatctttcttcatg 13608607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 402
Target Start/End: Original strand, 33390518 - 33390705
Alignment:
Q  215 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 314  Q
    ||||||||| || || |||||| ||||||| | |  |||||||| | || ||||| |||||||||  ||| || | | |||||||||||||||||| |||    
T  33390518 cttacttatcacatagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatctttgttc 33390617  T
Q  315 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgtttt 402  Q
    ||||||  | || |||| | |||||  |||  |||| | ||| ||||| || |||||||||||||| || ||||| |||||| |||||    
T  33390618 atgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttt 33390705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 402
Target Start/End: Original strand, 33403052 - 33403243
Alignment:
Q  211 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 310  Q
    ||||||||||||| || || |||||| ||||| | | |  |||||||| | || |||||||||||||||  ||| || ||||||  ||||||||||||||    
T  33403052 attacttacttatcacatagatcccaaccagatatactccccacttgttttagagcttccctccatcttgacaccatctcaaagccttgttggaatcttt 33403151  T
Q  311 cttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgtttt 402  Q
     |||||| ||  | |||||||||  ||||   ||  |||| | ||| ||||| || ||||||||||||||||| ||||| | |||| |||||    
T  33403152 tttcatgcttgacaaaggcttcacaataaataccactttgctttcgaacctcagaaggatcaacatcatagaaaacaggaataacatgtttt 33403243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 383
Target Start/End: Original strand, 33288016 - 33288188
Alignment:
Q  211 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 310  Q
    ||||||||||||| || || |||||| |||| || | |  |||||||| | || |||||||||||||||  ||| || | | ||| |||||||||| |||    
T  33288016 attacttacttatcacatagatcccaaccagcgatactccccacttgttttagggcttccctccatcttgacaccatctgagagtcttgttggaatgttt 33288115  T
Q  311 cttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaa 383  Q
     ||||||| | |  ||||||||| |||||   ||  |||| | ||||||||| || |||||||||||||||||    
T  33288116 gttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatcaacatcatagaa 33288188  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 404
Target Start/End: Original strand, 33060082 - 33060189
Alignment:
Q  297 ttgttggaatctttcttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaaca 396  Q
    |||||||||||||| |||||||||  | || ||||||  ||||  |||  |||| |  |||||||| || ||||||||||||||||| ||||| ||||||    
T  33060082 ttgttggaatctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaagaaca 33060181  T
Q  397 cgttttcc 404  Q
     |||||||    
T  33060182 tgttttcc 33060189  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 12781883 - 12781920
Alignment:
Q  168 caaagctttaaaatttgcacatgtaagtgcatcaataa 205  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  12781883 caaagctttaaaatttgcacaagtaattgcatcaataa 12781920  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 33361083 - 33361132
Alignment:
Q  355 cgcacctctgatggatcaacatcatagaacacaggcagaacacgttttcc 404  Q
    |||||||| || ||||||||||||||||| ||||| |||||| |||||||    
T  33361083 cgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcc 33361132  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 12781930 - 12781974
Alignment:
Q  200 caataaggaagattacttacttataacgtacatcccatccagaga 244  Q
    |||||||||||||| ||||||||| ||||| |||||| |||||||    
T  12781930 caataaggaagattgcttacttatcacgtagatcccagccagaga 12781974  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 404
Target Start/End: Complemental strand, 17438328 - 17438135
Alignment:
Q  211 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 310  Q
    ||||||||||||| ||||| |||||| |||| || | |  |||||||  | || |||||||||||||||  |||  | | || || ||||||||||||||    
T  17438328 attacttacttatcacgtagatcccaaccagcgatactccccacttgctttagagcttccctccatcttgacaccttctgaaggtcttgttggaatcttt 17438229  T
Q  311 cttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttcc 404  Q
     |||||||||  | || ||||||  ||||   ||  |||| | ||||||||| || ||||||||||||||||| ||||| |||||| |||||||    
T  17438228 gttcatgtttgacaaaagcttcatgataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcc 17438135  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 6472955 - 6473008
Alignment:
Q  231 atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac 284  Q
    |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||    
T  6472955 atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac 6473008  T

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