View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_1 (Length: 1040)
Name: NF1962_1D_low_1
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_1 |
 | |
|
| [»] scaffold0026 (4 HSPs) |
| | |
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Alignment Details
Target: scaffold0026 (Bit Score: 840; Significance: 0; HSPs: 4)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 133 - 1017
Target Start/End: Original strand, 101861 - 102745
Alignment:
| Q |
133 |
tatcaactatttaactcattcattgtcatagtcaatttagaactaactaatcacacttgaaccaaaatatatggtagtgtatgtaaaatttgaagaaata |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
101861 |
tatcaactatttaactcattcattgtcatagtcaatttagaactaactaatcacacttgaaccaaaatatatggtagtgtatgtaaaatttgaagaaata |
101960 |
T |
|
| Q |
233 |
taatactcctaatttggtggaaaaagcacaagctgacaaattgcagaataactccccaatggcatgaagggccaactccatctttaatcaatgaatgaat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
101961 |
taatactcctaatttggtggaaaaagcacaagctgacaaattgcagaataactccccaatggcatgaagggccaactccatctttaatcaatgaatgaat |
102060 |
T |
|
| Q |
333 |
ctcactatataccataaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
102061 |
ctcactatataccataaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcagcagttaacat |
102160 |
T |
|
| Q |
433 |
ggaagagaacactggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaag |
532 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
102161 |
ggaagagaacacaggcagttgtttcaccgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaag |
102260 |
T |
|
| Q |
533 |
tttttcaagaggtaagtcatcattattaactttttcaactcttggtttgtttcctgnnnnnnntttcatttaggcttgtattatatacactattatttaa |
632 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
102261 |
tttttcaagaggtaagtcattagtattaactttttcaactcttggtttgtttcctgaaaaaaaattcatttaggcttgtattatatacactattatttaa |
102360 |
T |
|
| Q |
633 |
cacaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgtt |
732 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
102361 |
cacaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgtt |
102460 |
T |
|
| Q |
733 |
cctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaaccttgcttaacacttagcatccattaatttattgattaatta |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
102461 |
cctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaaccttgcttaacacttagcatccattaatttattgattaatta |
102560 |
T |
|
| Q |
833 |
caattaattaggctctaagctatttgtgtctcttaaattgttttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaa |
932 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
102561 |
caattaattaggctctaagctatttgtgtctcttaaattgttatagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaa |
102660 |
T |
|
| Q |
933 |
tcaaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactact |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
102661 |
tcaaacttgaagaagttaggtgccactcattttaaatctggtgtaaaagatgagcattttgaggtaatactaacatactactact |
102745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 661 - 790
Target Start/End: Original strand, 100312 - 100441
Alignment:
| Q |
661 |
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc |
760 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||| ||| | || |||||||||| |||||||||||| |||||||| || |||||||||||||||| |
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|
| T |
100312 |
tgacttgttagaatactggagattgctccaccagctaaacaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagc |
100411 |
T |
|
| Q |
761 |
ctcatgccatgtctgtctttctcatggtaa |
790 |
Q |
| |
|
| ||||| |||||||||||||||||||||| |
|
|
| T |
100412 |
cacatgctatgtctgtctttctcatggtaa |
100441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 874 - 1001
Target Start/End: Original strand, 100631 - 100758
Alignment:
| Q |
874 |
tttagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctgg |
973 |
Q |
| |
|
||||||||||||| ||||||||||||||| | |||||||| ||||| || || || |||||||| |||||||| ||||||||||||||||| ||| |||| |
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|
| T |
100631 |
tttagacatgtgagtcagcagttcaactgcgcaaggctggaaaagtcacagtcagagaatcaaatttgaagaaattaggtgccactcatttcaaaactgg |
100730 |
T |
|
| Q |
974 |
tgtaaaagatgagcattttgaggtaata |
1001 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |
|
|
| T |
100731 |
tgtacaagatgaacattttgaggtaata |
100758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 453 - 548
Target Start/End: Original strand, 100087 - 100182
Alignment:
| Q |
453 |
gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag |
548 |
Q |
| |
|
||||||| || || ||||| ||||||||||| || |||||||||||||| ||||| || || | || |||||||||||||||||||||| ||||| |
|
|
| T |
100087 |
gtttcacagaagagcaagatgctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaag |
100182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 223 - 828
Target Start/End: Complemental strand, 25848326 - 25847731
Alignment:
| Q |
223 |
tgaagaaatataatactcctaatttggtggaaaaagcacaagctgacaaattgcagaataactccccaatggcatgaagggccaactccatctttaatca |
322 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25848326 |
tgaagaaatataatactcctaatttgttggaaaaagcacaagctgacaaactgcaaaataactccccattggcatgaagggccaactccatctttaatca |
25848227 |
T |
|
| Q |
323 |
atgaatgaatctcactatataccataaaacctgtaccatagcacaagctacaaaattaacaatttcttaattatccactgtcactattattcttaatcag |
422 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
25848226 |
atgaatgaatctcattatataccatgaaaactgtaccatagcacaagctacaaaatcaacaat----------------------attattcttaatcag |
25848149 |
T |
|
| Q |
423 |
cagttaacatggaagagaacactggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatct |
522 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
25848148 |
cagttaacatggaagagaacacaggcagttgtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagtacaactctggagatct |
25848049 |
T |
|
| Q |
523 |
gagtctcaagtttttcaagaggtaagtcatca----------ttattaactttttcaactcttggtttgtttcctgnnnnnnnt-----ttcatttaggc |
607 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
25848048 |
gagtctcaagtttttcaagaagtaagtcattaatttcatttattattaactttttcaactcttggtttgttttatgatgaaaaaaaaaattcatttaggc |
25847949 |
T |
|
| Q |
608 |
ttgtattatatacactattatttaacacaacattatttttgaacaattgattatgacatgttagaatttttgagattgctccaccagctaagcaactatt |
707 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | || |
|
|
| T |
25847948 |
ttgtaatatatacactattatttaactcaacattatttttgaa---ttgattatgacatgttagaatccttgagattgctccaccagctaagcaattgtt |
25847852 |
T |
|
| Q |
708 |
ctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagcctcatgccatgtctgtctttctcatggtaaccttgcttaacacttag |
807 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||| |
|
|
| T |
25847851 |
ctcattcttaaaagattcaaatgttccattggagcacaatcctaagctcaagcctcatgccatgtctgtctttcttatggtaagcttacttaacagttat |
25847752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 876 - 1015
Target Start/End: Complemental strand, 25847654 - 25847515
Alignment:
| Q |
876 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
975 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
25847654 |
tagacatgtgaatcagcagttcaactacgtaaggctggtaaagtcactgttagagaatcaaacttgaaaaagttaggtgccactcatttcaaaactggtg |
25847555 |
T |
|
| Q |
976 |
taaaagatgagcattttgaggtaatactaacatactacta |
1015 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25847554 |
taaaagatgagcattttgaggtaatactaacatactacta |
25847515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 661 - 790
Target Start/End: Complemental strand, 25849875 - 25849746
Alignment:
| Q |
661 |
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc |
760 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25849875 |
tgacttgttagaatactggagattgctccaccagctaagcaaatgttttcattcttaaaagattcaaatgttcctttggagcaaaatcctaagcttaagc |
25849776 |
T |
|
| Q |
761 |
ctcatgccatgtctgtctttctcatggtaa |
790 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |
|
|
| T |
25849775 |
ctcatgctatgtctgtttttctcatggtaa |
25849746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 25848463 - 25848375
Alignment:
| Q |
133 |
tatcaactatttaactcattcattgtcatagtcaatttagaactaactaatcacactt-gaaccaaaatatatggtagtgtatgtaaaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25848463 |
tatcaactatttaactcattcattgtcatagtcaattcagaactaattaatcacacttagaaccaaaatatatggtagtgtatgtaaaa |
25848375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 669 - 790
Target Start/End: Complemental strand, 25845656 - 25845535
Alignment:
| Q |
669 |
tagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagcctcatgcc |
768 |
Q |
| |
|
|||||| ||||||||||||||| ||||| | |||| ||||||||||| | ||||||||| |||||||||||| |||| | ||||||||||| |||||| |
|
|
| T |
25845656 |
tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagaaaaacaccaagctcaagccacatgcc |
25845557 |
T |
|
| Q |
769 |
atgtctgtctttctcatggtaa |
790 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25845556 |
atgtctgtctttctcatggtaa |
25845535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 876 - 999
Target Start/End: Complemental strand, 25849594 - 25849471
Alignment:
| Q |
876 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
975 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||| ||||| | || || |||||||| |||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
25849594 |
tagacatgtgaatcagcagttcagctgcgtaaggctggtaaagtcagagtgagagaatcaaatttgaagaagttaggtgccactcatttcaaaactggtg |
25849495 |
T |
|
| Q |
976 |
taaaagatgagcattttgaggtaa |
999 |
Q |
| |
|
| ||||||| ||||||||||||| |
|
|
| T |
25849494 |
tgcaagatgaacattttgaggtaa |
25849471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 453 - 507
Target Start/End: Complemental strand, 25845846 - 25845792
Alignment:
| Q |
453 |
gtttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaa |
507 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
25845846 |
gtttcactgaagaacaagaagctcttgtggtgaagtcatggaatgcaatgaagaa |
25845792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 876 - 998
Target Start/End: Complemental strand, 25845303 - 25845181
Alignment:
| Q |
876 |
tagacatgtgaatcagcagttcaactgaggaaggctggcaaagtaactgttagtgaatcaaacttgaagaagttaggtgccactcattttaaatctggtg |
975 |
Q |
| |
|
|||||||||||||||||||||||| || | || | || ||||| || || || ||||||| |||||| || |||||||| | |||||||||| ||||| |
|
|
| T |
25845303 |
tagacatgtgaatcagcagttcaattgcgaaaatccggtaaagttacggtcagagaatcaagcttgaaaaaattaggtgctaaccattttaaatatggtg |
25845204 |
T |
|
| Q |
976 |
taaaagatgagcattttgaggta |
998 |
Q |
| |
|
|| ||| ||||||||||||||| |
|
|
| T |
25845203 |
tagtagacgagcattttgaggta |
25845181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 454 - 548
Target Start/End: Complemental strand, 25850105 - 25850011
Alignment:
| Q |
454 |
tttcactgaggaacaagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaag |
548 |
Q |
| |
|
|||||| || || ||||||||||||||||| ||||||||||| ||||| ||||| || || || ||||||||||||||||||| || ||||| |
|
|
| T |
25850105 |
tttcacagaagagcaagaagctctagtggtaaagtcatggaacgcaatgaagaataattcttgtgacctgagtctcaagtttttcacgaagtaag |
25850011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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