View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_10 (Length: 449)
Name: NF1962_1D_low_10
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_10 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 21 - 449
Target Start/End: Original strand, 3659355 - 3659767
Alignment:
| Q |
21 |
cacaattatctaaatgccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattaccaaacaa |
120 |
Q |
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|||| |||||||||| |||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659355 |
cacacttatctaaattccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaa |
3659453 |
T |
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| Q |
121 |
tctaagtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaa |
220 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3659454 |
tctaagtccaatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaa |
3659553 |
T |
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| Q |
221 |
aattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctct |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659554 |
aattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc------------- |
3659640 |
T |
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| Q |
321 |
ttcactatatctccgttatcgctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaacaccctgataagagtccacaacat |
420 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3659641 |
--cactatatctccgtcatcgctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaacaccctgagaagagtccacaacat |
3659738 |
T |
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| Q |
421 |
ctacaactgcaaactttctattctccaaa |
449 |
Q |
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| T |
3659739 |
ctacaactgcaaactttctattctccaaa |
3659767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 38 - 382
Target Start/End: Original strand, 3653106 - 3653449
Alignment:
| Q |
38 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
136 |
Q |
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||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
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| Q |
137 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
236 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
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| Q |
237 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgt |
336 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3653304 |
ctcttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgt |
3653403 |
T |
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| Q |
337 |
tatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3653404 |
catcgctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 125 - 382
Target Start/End: Original strand, 3657199 - 3657452
Alignment:
| Q |
125 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtag---acaaagccttacatgaatataatgtaacgacatttcacgtcaaa |
221 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||| |||| |||| | | |||||||| || |||| |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatga---taattttatgacatttcgcgacaaa |
3657295 |
T |
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| Q |
222 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
321 |
Q |
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| T |
3657296 |
ttgttcacaccattactcttcaagtct----tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctt |
3657391 |
T |
|
| Q |
322 |
tcactatatctccgttatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
382 |
Q |
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||| | |||||| | | | || ||||| ||||||||| ||| |||||||||||||||||| |
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| T |
3657392 |
tcagtcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 363
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
| Q |
222 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
321 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
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| Q |
322 |
tcactatatctccgttatcgctactacgtgttgatcctccac |
363 |
Q |
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||||| |||||| | | | |||||||| ||||||||||||| |
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| T |
3649281 |
tcactcaatctccataaccactactacgcgttgatcctccac |
3649322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
222 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
280 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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