View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_low_11 (Length: 420)

Name: NF1962_1D_low_11
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_low_11
NF1962_1D_low_11
[»] chr2 (3 HSPs)
chr2 (22-211)||(4751491-4751680)
chr2 (334-389)||(2774364-2774419)
chr2 (364-412)||(18491544-18491592)
[»] chr7 (1 HSPs)
chr7 (364-420)||(12473560-12473616)
[»] chr1 (1 HSPs)
chr1 (364-418)||(2774210-2774264)
[»] chr4 (1 HSPs)
chr4 (328-407)||(28856228-28856307)
[»] chr8 (2 HSPs)
chr8 (364-406)||(14354605-14354647)
chr8 (364-405)||(8173014-8173055)
[»] scaffold0040 (1 HSPs)
scaffold0040 (364-420)||(49965-50021)
[»] chr5 (1 HSPs)
chr5 (364-420)||(22028663-22028719)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 4751491 - 4751680
Alignment:
Q  22 aagagcaagtgacgaaattatctgcattcagaattagccttagcttgctttgtagaaatcacctgattctggaaataaaccagaaaagctcgaatagtct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4751491 aagagcaagtgacgaaattatctgcattcagaattagccttagcttgctttgtagaaatcacctgattctggaaataaaccagaaaagctcgaatagtct 4751590  T
Q  122 ccctatagggttttgacacacctttccataaaacgtgatcaccttccacaatagagtacctaaacatgattacaagaattaataattgat 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4751591 ccctgtagggttttgacacacctttccataaaacgtgatcaccttccacaatagagtacctaaacatgattacaagaattaataattgat 4751680  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 2774364 - 2774419
Alignment:
Q  334 tttggcaagcacaatgagctaacttgtaatctcatatgactaaacaagacccattt 389  Q
    ||||||||||||||| ||||| ||| ||| |||||||||||||| |||||||||||    
T  2774364 tttggcaagcacaataagctagcttataagctcatatgactaaaaaagacccattt 2774419  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 18491544 - 18491592
Alignment:
Q  364 ctcatatgactaaacaagacccatttggtaaccgtcattttcttatgag 412  Q
    ||||| ||||||||||||||||  ||||||||||||||||||| |||||    
T  18491544 ctcatttgactaaacaagacccgattggtaaccgtcattttctcatgag 18491592  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 12473616 - 12473560
Alignment:
Q  364 ctcatatgactaaacaagacccatttggtaaccgtcattttcttatgagcttatagc 420  Q
    ||||| |||||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  12473616 ctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagc 12473560  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 2774210 - 2774264
Alignment:
Q  364 ctcatatgactaaacaagacccatttggtaaccgtcattttcttatgagcttata 418  Q
    |||||||||||||| ||||| ||||||||||||||| |||| | |||||||||||    
T  2774210 ctcatatgactaaaaaagactcatttggtaaccgtctttttttcatgagcttata 2774264  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 28856228 - 28856307
Alignment:
Q  328 ggtatgtttggcaagcacaatgagctaacttgtaatctcatatgactaaacaagacccatttggtaaccgtcattttctt 407  Q
    |||||| |||||||||||||| | ||| ||| ||  |||||||||||| ||||| ||||| |  ||||||||||||||||    
T  28856228 ggtatgattggcaagcacaataacctagcttatatgctcatatgactacacaagtcccatctcataaccgtcattttctt 28856307  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 14354647 - 14354605
Alignment:
Q  364 ctcatatgactaaacaagacccatttggtaaccgtcattttct 406  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||    
T  14354647 ctcatatgactaaaaaagacccatttggtaacagtcgttttct 14354605  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 8173055 - 8173014
Alignment:
Q  364 ctcatatgactaaacaagacccatttggtaaccgtcattttc 405  Q
    |||||||||||||| |||||| |||||||||| |||||||||    
T  8173055 ctcatatgactaaaaaagaccgatttggtaacagtcattttc 8173014  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 50021 - 49965
Alignment:
Q  364 ctcatatgactaaacaagacccatttggtaaccgtcattttcttatgagcttatagc 420  Q
    ||||| |||||||| ||||||| ||||||||| |||| ||||| | |||||||||||    
T  50021 ctcatttgactaaaaaagacccgtttggtaacggtcactttctcacgagcttatagc 49965  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 22028663 - 22028719
Alignment:
Q  364 ctcatatgactaaacaagacccatttggtaaccgtcattttcttatgagcttatagc 420  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||| |  ||||||||||    
T  22028663 ctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagc 22028719  T

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