View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_12 (Length: 419)
Name: NF1962_1D_low_12
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_12 |
 | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 23 - 413
Target Start/End: Original strand, 31150233 - 31150623
Alignment:
| Q |
23 |
aaatattgcatgtctgaagttgttcttcaactagagtttgatgcagaattagcttttgagcaccaattagaccatcatccctataaattttgcttagatc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31150233 |
aaatattgcatgtctgaagttgttcttcaactagagtttgatgcagaattagcttttgagcaccaattagaccatcatccctataaattttgcttagatc |
31150332 |
T |
|
| Q |
123 |
atcaataaggcagaacacaggaaattgatgagagattttgttgtatagaatagtagcaagggttgtcttccctactccacccatcccacaaattcctaca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31150333 |
atcaataaggcagaacacaggaaattgatgagagattttgttgtatagaatagtagcaagggttgtcttccctactccacccatcccacaaattcctaca |
31150432 |
T |
|
| Q |
223 |
acacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31150433 |
acacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgt |
31150532 |
T |
|
| Q |
323 |
aacccaacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31150533 |
aacccaacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttttattctgttatttaacaacaccaaa |
31150623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 75 - 364
Target Start/End: Original strand, 31161579 - 31161868
Alignment:
| Q |
75 |
cttttgagcaccaattagaccatcatccctataaattttgcttagatcatcaataaggcagaacacaggaaattgatgagagattttgttgtatagaata |
174 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| | |
|
|
| T |
31161579 |
cttttgagcactgatcggaccatcatgcctataaatttttcttagatcatcaataaggaagagcacaggaaattgatgaaagattttgttgtataatgca |
31161678 |
T |
|
| Q |
175 |
gtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgta |
274 |
Q |
| |
|
||||| | | | ||||||||| ||||||||||||||||| ||||||||| || |||||||||| ||| |||||||||||||||||||||||||| | | |
|
|
| T |
31161679 |
gtagcgatagctttcttccctattccacccatcccacaaactcctacaacccgcacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctg |
31161778 |
T |
|
| Q |
275 |
gaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatct |
364 |
Q |
| |
|
| |||||| |||||| |||||| ||||||||| | | | |||||||||||| ||||| | ||| ||||| |||||||||||||||| |
|
|
| T |
31161779 |
taagagaatccatcccagctaaataatttggaagacttgtagacttgtaacccagtatattcataatttcttcgacgatcttttcaatct |
31161868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 55 - 380
Target Start/End: Original strand, 31019717 - 31020042
Alignment:
| Q |
55 |
agagtttgatgcagaattagcttttgagcaccaattagaccatcatccctataaattttgcttagatcatcaataaggcagaacacaggaaattgatgag |
154 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
31019717 |
agagtttggtgtagaatttgcttttgtgcaccaacttgaccatcatgtctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgag |
31019816 |
T |
|
| Q |
155 |
agattttgttgtatagaatagtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaa |
254 |
Q |
| |
|
|||||| |||| | |||||| || ||||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
31019817 |
agatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaaagtaa |
31019916 |
T |
|
| Q |
255 |
atgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatc |
354 |
Q |
| |
|
| ||| ||| || | || | ||| || ||| || |||| | |||||||||| ||||| |||| |||||| ||||| | ||||||||||| ||| |
|
|
| T |
31019917 |
tagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgacccaatatattcaatatctcttcaacaatc |
31020016 |
T |
|
| Q |
355 |
ttttcaatctctgcatgttgtggcct |
380 |
Q |
| |
|
|||| |||||| |||| ||| ||||| |
|
|
| T |
31020017 |
tttttaatctcagcatattgaggcct |
31020042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 390
Target Start/End: Original strand, 31159166 - 31159501
Alignment:
| Q |
55 |
agagtttgatgcagaattagcttttgagcaccaattagaccatcatccctataaattttgcttagatcatcaataaggcagaacacaggaaattgatgag |
154 |
Q |
| |
|
|||||||| || || ||| ||||||| ||||||||| ||||||||| ||||| ||| |||||||||||||||||| || ||| |||| |||||| |
|
|
| T |
31159166 |
agagtttggtgtaggatttgcttttgtgcaccaattggaccatcatgtctatatattctgcttagatcatcaataaaacaacgtacatcaaatcgatgag |
31159265 |
T |
|
| Q |
155 |
agattttgttgtatagaatagtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaa |
254 |
Q |
| |
|
||||| | ||| | ||||| ||| ||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
31159266 |
agattctaccacataaagcagtagtaagagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaacggagtccaaaagtaa |
31159365 |
T |
|
| Q |
255 |
atgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatc |
354 |
Q |
| |
|
| ||| ||| || | || |||| ||| || || ||||| | |||||||||| ||||| |||| |||| | ||||| ||||||||||| ||| |
|
|
| T |
31159366 |
tagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccgatatattcgttatctcttcaacaatc |
31159465 |
T |
|
| Q |
355 |
ttttcaatctctgcatgttgtggcctgcaagtttta |
390 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
31159466 |
ttttcaatctctgcatattgaggcctgaaagtttta |
31159501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 31477001 - 31476882
Alignment:
| Q |
179 |
caagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagagg |
278 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| | ||||||||||| ||| ||| |
|
|
| T |
31477001 |
caagggttgtcttccctattccacccatcccacaaattcctacaacatgaacatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctagg |
31476902 |
T |
|
| Q |
279 |
agaatgcatcccgactaaat |
298 |
Q |
| |
|
||||| |||||| ||||||| |
|
|
| T |
31476901 |
agaatccatcccaactaaat |
31476882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 57 - 380
Target Start/End: Original strand, 31029600 - 31029923
Alignment:
| Q |
57 |
agtttgatgcagaattagcttttgagcaccaattagaccatcatccctataaattttgcttagatcatcaataaggcagaacacaggaaattgatgagag |
156 |
Q |
| |
|
|||||| || |||||| ||||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
31029600 |
agtttggtgtagaatttgcttttgtgcaccaacttgaccatcatgtctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagag |
31029699 |
T |
|
| Q |
157 |
attttgttgtatagaatagtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaat |
256 |
Q |
| |
|
|||| |||| | ||||| || ||||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
31029700 |
atttgaccatataaagcagtagtcagagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaaagtaata |
31029799 |
T |
|
| Q |
257 |
gtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatctt |
356 |
Q |
| |
|
| ||| ||| || | || | ||| || ||| || |||| | |||||||||| ||||| |||| |||||| ||||| | ||||||||||| ||||| |
|
|
| T |
31029800 |
gatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgacccaatatattcaatatctcttcaacaatctt |
31029899 |
T |
|
| Q |
357 |
ttcaatctctgcatgttgtggcct |
380 |
Q |
| |
|
|| |||||| |||| ||| ||||| |
|
|
| T |
31029900 |
tttaatctcagcatattgaggcct |
31029923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 74 - 387
Target Start/End: Complemental strand, 31489810 - 31489497
Alignment:
| Q |
74 |
gcttttgagcaccaattagaccatcatccctataaattttgcttagatcatcaataaggcagaacacaggaaattgatgagagattttgttgtatagaat |
173 |
Q |
| |
|
||||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||| || || ||||||||||||||||| |||| | |
|
|
| T |
31489810 |
gcttttgtgcaccaacttgaccatcatgtctatatattttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagc |
31489711 |
T |
|
| Q |
174 |
agtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgt |
273 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||||||||||||| | ||| ||| || || | |
|
|
| T |
31489710 |
agtagccagagttgtcttccctattccacccatcccacaaattcctacaacccgaacatcatcaatggagtccaaaagtaatagatttgctactttatct |
31489611 |
T |
|
| Q |
274 |
agaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgcatgtt |
373 |
Q |
| |
|
| | |||||| ||| || |||| | |||||||||| ||| | |||| |||||| ||||| | ||||| ||||| ||||||| ||||||| ||| || |
|
|
| T |
31489610 |
atatgagaattcataccaactagttcttttggaagagatgaataattgtgacccaatatattcaatatctcgtcaacaatctttttaatctcttcatatt |
31489511 |
T |
|
| Q |
374 |
gtggcctgcaagtt |
387 |
Q |
| |
|
| |||||| ||||| |
|
|
| T |
31489510 |
gaggcctgaaagtt |
31489497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 31496959 - 31496865
Alignment:
| Q |
174 |
agtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaatt |
268 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||||||||||||||| ||||| |||||| || |||||||||||||||| | |||||||||| |
|
|
| T |
31496959 |
agtagcaagggtagtcttccctattcctcccatcccacaaattcctatgacacgaccatcattaaccgagtccaaaagtaaaagcttttctaatt |
31496865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 31502123 - 31502035
Alignment:
| Q |
179 |
caagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaat |
267 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||| | | |||||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
31502123 |
caagggttgtcttccctattccacccatcccacagattcctacagcttgaacatcatcaacagagtccaagagtaaaagtttttctaat |
31502035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 368
Target Start/End: Original strand, 31528447 - 31528639
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtag |
275 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||| |||| | |||||||||| | |||||||||||| | ||||| ||| | || |
|
|
| T |
31528447 |
tagcaagagttgtcttccctactccacccatcccagaaattccaacaatcctaacatcatcaaccacatccaaaagtaaaagcttttccaatctttctat |
31528546 |
T |
|
| Q |
276 |
aggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgc |
368 |
Q |
| |
|
|||||||| |||| ||||||| |||||||| | ||||| ||| || ||| |||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
31528547 |
gagagaatgcgtcccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgc |
31528639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 363
Target Start/End: Original strand, 31033918 - 31034207
Alignment:
| Q |
74 |
gcttttgagcaccaattagaccatcatccctataaattttgcttagatcatcaataaggcagaacacaggaaattgatgagagattttgttgtatagaat |
173 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| |||||||| |||||| || | |||| | || |||||||||||||||| ||| || ||| |
|
|
| T |
31033918 |
gcttttgagcaccaatc-gaccttcatttctataaactttgcttatatcatcgatgaagcagcatgcatcaaattgatgagagattctgtcataaagagc |
31034016 |
T |
|
| Q |
174 |
agtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatg-tttttctaattcatg |
272 |
Q |
| |
|
|||||| || || ||||| |||| ||| ||||| ||| ||||||||||||| | | | |||| || |||||||||||| |||||||||||| | |
|
|
| T |
31034017 |
agtagctagagtcgtctttcctattcctcccattccataaattcctacaacctgtataatatcagttgattccaaaagtaaacactttttctaattcttc |
31034116 |
T |
|
| Q |
273 |
tagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatc |
363 |
Q |
| |
|
|| | |||||| ||||| ||||||| |||||||||| | |||||| ||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
31034117 |
tataagagaatcaatcccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttttcaatc |
31034207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 386
Target Start/End: Complemental strand, 31483012 - 31482645
Alignment:
| Q |
25 |
atattgcatgtctgaagttgttcttcaactagagtttgatgcagaattagcttttgagcaccaattagaccatcatccctataaattttgcttagatcat |
124 |
Q |
| |
|
|||||| || |||||| ||||||||| ||||||||||||| |||||| ||||||| ||||||| | |||| | || ||| | ||||||||| ||||| |
|
|
| T |
31483012 |
atattgtatatctgaatgtgttcttcacctagagtttgatgtagaatttgcttttgtgcaccaactggaccgtaatatctaaattttttgcttacatcat |
31482913 |
T |
|
| Q |
125 |
caataaggcagaacacaggaaattgatgagagattttgttgt------atagaatagtagcaagggttgtcttccctactccacccatcccacaaattcc |
218 |
Q |
| |
|
|||||| ||| | || |||||| | ||| |||| |||| ||| || || |||||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
31482912 |
caataaaacagcatgcatcgaattgaggtgagtttttcttgttgcaatataaaacagaagcaagagttgtcttcccaactccactcatcccacaaattcc |
31482813 |
T |
|
| Q |
219 |
tacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaac |
318 |
Q |
| |
|
|| | |||| | ||||| |||||||||||||| ||||| ||||| | || ||||| | |||| || ||||||| |||||||||| ||||| |
|
|
| T |
31482812 |
aacggccaggaccttatcaacggagtccaaaagtaagcacttttccaattcttctataggaggaagcattccaactaaatcatttggaagatatgaaaat |
31482713 |
T |
|
| Q |
319 |
ttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagt |
386 |
Q |
| |
|
|||||||| ||| | | || ||||||| ||| || ||||||||||| ||| || ||||||| |||| |
|
|
| T |
31482712 |
ttgtaaccaaacgtctccactatctctttaacaatagtttcaatctcttcattttctggcctgaaagt |
31482645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 31245117 - 31245022
Alignment:
| Q |
174 |
agtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattc |
269 |
Q |
| |
|
||||||||| || |||||||||| ||||||||| |||||||| ||||| || || ||||||||| ||||||| || ||| | ||||||||||| |
|
|
| T |
31245117 |
agtagcaagagtagtcttccctattccacccattccacaaatccctaccactcgaacatcatcatctgagtccataatcaaaagcttttctaattc |
31245022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 304
Target Start/End: Complemental strand, 17438857 - 17438730
Alignment:
| Q |
177 |
agcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtaga |
276 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||||||||| | |||| ||| |||||| |||||||||||||||||| |||| |||| | | || | |
|
|
| T |
17438857 |
agcaagggttgtcttccctattcctcccatcccccaaattcctatagcacgaacaccatcaaccgagtccaaaagtaaatgattttttaatgcttctata |
17438758 |
T |
|
| Q |
277 |
ggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
|||||| ||||| ||||||| ||||| |
|
|
| T |
17438757 |
cgagaatttatcccaactaaatcttttg |
17438730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 33642633 - 33642504
Alignment:
| Q |
175 |
gtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgta |
274 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||||||| | |||| ||| |||||| ||||||||||| ||||| |||| |||| | | || |
|
|
| T |
33642633 |
gtagcaagggttgtcttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagtccaaaagcaaatgattttgtaatgctttta |
33642534 |
T |
|
| Q |
275 |
gaggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| |
|
|
| T |
33642533 |
taggagaatcaatcccaactaaatcttttg |
33642504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 31560839 - 31560711
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtag |
275 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||| ||||||||||||| |||||| ||| ||||| |||||||||||| ||||| |||| |||| | | || |
|
|
| T |
31560839 |
tagcaagggctgtcttccctattcctcccattccacaaattcctataacacgaacaccatcatccgagtccaaaagcaaatgattttgtaatgcttctat |
31560740 |
T |
|
| Q |
276 |
aggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| |
|
|
| T |
31560739 |
aggagaattaatcccaactaaatcttttg |
31560711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 33059612 - 33059741
Alignment:
| Q |
175 |
gtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgta |
274 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| ||||||||||||| | |||| ||| |||||| |||| |||||| ||||| |||| |||| | |||| |
|
|
| T |
33059612 |
gtagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagttcaaaagcaaatgattttgtaatgcttgta |
33059711 |
T |
|
| Q |
275 |
gaggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| |
|
|
| T |
33059712 |
taggagaatcaatcccaactaaatcttttg |
33059741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 33273842 - 33273970
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtag |
275 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||||||||| | |||| ||| |||| |||||||||||||||||| |||| |||| | | || |
|
|
| T |
33273842 |
tagcaagggttgtcttccctattcctcccattccacaaattcctatagcacgaacactgtcaaccgagtccaaaagtaaatgattttgtaatccgtctaa |
33273941 |
T |
|
| Q |
276 |
aggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
| |||||| ||||| ||||||| ||||| |
|
|
| T |
33273942 |
acgagaatctatcccaactaaatcttttg |
33273970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 304
Target Start/End: Complemental strand, 31567157 - 31567030
Alignment:
| Q |
177 |
agcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtaga |
276 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| ||||||||||||| | |||| ||| |||||| |||||||||||| ||||| |||| ||| | | || | |
|
|
| T |
31567157 |
agcaagggctgtcttccctattccccccattccacaaattcctatagcacgaacaccatcaatcgagtccaaaagcaaatgattttgtaacgcttctata |
31567058 |
T |
|
| Q |
277 |
ggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
||||||| ||||| ||||||| ||||| |
|
|
| T |
31567057 |
ggagaatcaatcccaactaaatcttttg |
31567030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 9168826 - 9168952
Alignment:
| Q |
178 |
gcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagag |
277 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| ||||||||||||| | |||| ||| |||||| ||||||||||| ||||| |||| |||| | | || || |
|
|
| T |
9168826 |
gcaagagttgtcttccctattcctcccattccacaaattcctatagcacgaacaccatcaattgagtccaaaagcaaatgattttgtaatgcttctatag |
9168925 |
T |
|
| Q |
278 |
gagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
|||||| ||||| ||||||| ||||| |
|
|
| T |
9168926 |
gagaattaatcccaactaaatcttttg |
9168952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 304
Target Start/End: Original strand, 33402540 - 33402792
Alignment:
| Q |
55 |
agagtttgatgcagaattagcttttgagcaccaattagaccatcatcc---ctataaattttgcttagatcatcaataaggcagaacacaggaaattgat |
151 |
Q |
| |
|
||||||||||| || ||| ||||||| ||| ||||| | ||||||| |||||||||||||||| ||||||||| | ||| | || |||| ||| |
|
|
| T |
33402540 |
agagtttgatgtaggatttgcttttgtgcatcaattgggccatcatataatctataaattttgcttacatcatcaatgaaacaggatgcactaaatcgat |
33402639 |
T |
|
| Q |
152 |
gagagattttgttgtatagaatagtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaag |
251 |
Q |
| |
|
||||||||| | |||| | | ||||||||||||||||||||| ||| ||||| |||||||||| || | |||| ||| |||||| | ||||||||| |
|
|
| T |
33402640 |
gagagatttggccatataaattcatagcaagggttgtcttccctattcctcccattccacaaattcttatagcacgaacaccatcaaccaagtccaaaac |
33402739 |
T |
|
| Q |
252 |
taaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
||||| |||| |||| | | || |||||||| ||||| ||||||| ||||| |
|
|
| T |
33402740 |
caaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttg |
33402792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 33306536 - 33306664
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtag |
275 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||| ||||||||| | ||| ||| ||||| |||||||||||| ||||| |||| |||| | | || |
|
|
| T |
33306536 |
tagcaagggttgtcttccctattcctcccattccagaaattcctatagcacaaacacaatcaaccgagtccaaaagcaaatgattttttaatgcttctat |
33306635 |
T |
|
| Q |
276 |
aggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| |
|
|
| T |
33306636 |
aggagaatcaatcccaactaaatcttttg |
33306664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 33390124 - 33390244
Alignment:
| Q |
178 |
gcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagag |
277 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||||||||||||| | || | ||| |||||| ||||||||||| ||||| |||| |||| | | || || |
|
|
| T |
33390124 |
gcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctatag |
33390223 |
T |
|
| Q |
278 |
gagaatgcatcccgactaaat |
298 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
33390224 |
gagaatcaatccctactaaat |
33390244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 33264699 - 33264790
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaat |
267 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||||| | |||| ||| |||||| | ||||||||| ||||| |||| |||| |
|
|
| T |
33264699 |
tagcaagggttgtcttccctattcctcccatcccccaaattcctatagcacgaacaccatcaaccatgtccaaaaggaaatgattttgtaat |
33264790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 33412003 - 33412094
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaat |
267 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||| ||||||||||| | | ||| ||| |||||| |||||||||||||||||| |||| |||| |
|
|
| T |
33412003 |
tagcaagggttgtctttcctattccgcccattccacaaattccaatagcacaaacaccatcaaccgagtccaaaagtaaatgattttgtaat |
33412094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 33360128 - 33360257
Alignment:
| Q |
175 |
gtagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgta |
274 |
Q |
| |
|
|||||||||||||| ||||| | ||| || || ||||||||||||| | |||| ||| |||||| ||||| |||||| ||||| |||| |||| | |||| |
|
|
| T |
33360128 |
gtagcaagggttgttttcccaattcctccaattccacaaattcctatagcacgaacaccatcaaccgagttcaaaagcaaatgattttgtaatgcttgta |
33360227 |
T |
|
| Q |
275 |
gaggagaatgcatcccgactaaattttttg |
304 |
Q |
| |
|
|||||||| ||| | ||||||| ||||| |
|
|
| T |
33360228 |
taggagaatcaatctcaactaaatcttttg |
33360257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 49 - 127
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaa |
254 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||||| |||||| ||| |||||| ||| | ||||||||| |
|
|
| T |
49 |
tagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaacaccatcaaccgaattcaaaagtaa |
127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 8810 - 8888
Alignment:
| Q |
176 |
tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaa |
254 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||||| |||||| ||| |||||| ||| | ||||||||| |
|
|
| T |
8810 |
tagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaacaccatcaaccgaattcaaaagtaa |
8888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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