View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_13 (Length: 409)
Name: NF1962_1D_low_13
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 13855406 - 13855055
Alignment:
| Q |
15 |
catcacctccgttctcggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcaca |
114 |
Q |
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| T |
13855406 |
catcacctccgttctcggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcaca |
13855307 |
T |
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| Q |
115 |
ctaaccgccaccggtttctcaagcaacacatgcttccccttctttgcagcagccaccgcccatttcacatgcaacgtcgtcagtaatggcaagtaaacag |
214 |
Q |
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| T |
13855306 |
ctaaccgccaccggtttctcaagcaacacatgcttccccttcttcgcagcagccaccgcccatttcacatgtaacgtcgtcggtaacggcaagtaaacag |
13855207 |
T |
|
| Q |
215 |
cgtcaacattagggtcgtcaagaacttcttcgtatgagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagag |
314 |
Q |
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| T |
13855206 |
cgtcaacattagggtcgtcaagaacttcttcgtaagagccgtagactttggcggtgggacggaagttgttgagttttgcgaaggtggttgctttggagag |
13855107 |
T |
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| Q |
315 |
agtgcggctgccgacggcggagattgtggcggtggaagagaggagaatggtg |
366 |
Q |
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| T |
13855106 |
agtgcggctgccgacggcggagattgtggcggtggaagagaggagaatggtg |
13855055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 13849616 - 13849267
Alignment:
| Q |
15 |
catcacctccgttctcggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcaca |
114 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13849616 |
catcacctctgttctaggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcaca |
13849517 |
T |
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| Q |
115 |
ctaaccgccaccggtttctcaagcaacacatgcttccccttctttgcagcagccaccgcccatttcacatgcaacgtcgtcagtaatggcaagtaaacag |
214 |
Q |
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|| || |||||||| ||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || |||| |||||||| |
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| T |
13849516 |
ctcacagccaccggcttctctaacaaaacatgcttccccttcttcgcagcagccaccgcccatttcacatgcaacgtagtcggcaacggcacgtaaacag |
13849417 |
T |
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| Q |
215 |
cgtcaacattagggtcgtcaagaacttcttcgtatgagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagag |
314 |
Q |
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|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13849416 |
cgtcaacattagggtcatcaagaacttcttcataggagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagag |
13849317 |
T |
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| Q |
315 |
agtgcggctgccgacggcggagattgtggcggtggaagagaggagaatgg |
364 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
13849316 |
agtgcggctgccgacggcagagatggtggcggtggaagagaggagaatgg |
13849267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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