View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_15 (Length: 372)
Name: NF1962_1D_low_15
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 14768944 - 14768574
Alignment:
| Q |
1 |
gatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14768944 |
gatctggtaaaacaaccacagccaaatccatctacaatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa |
14768845 |
T |
|
| Q |
101 |
tgataattatagaggggttattcatttacagnnnnnnnttctttcagatgccctgaaaacaaaggagaagatagatagcattgggttgggagcaaataag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14768844 |
tgataattatagaggggttattcatttacagaaaaaaattctttcagatgccctgaaaacaaaggagaagatagatagtattgggttgggagcaaataag |
14768745 |
T |
|
| Q |
201 |
ttggagacaagacttagagggaaaaaggtattcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14768744 |
ttggagacaagacttagagggaaaaaggtattcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggcaatcgtgcatggtttg |
14768645 |
T |
|
| Q |
301 |
gtactggaagtgtaataattgttacaaccagagatgtacaccttcttaatttacttgaagatgtccatctc |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
14768644 |
gtactggaagtgtaataattgttacaaccagagatgtacaccttcttaatttacttgaagttgaccatctc |
14768574 |
T |
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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 32412722 - 32412641
Alignment:
| Q |
268 |
taaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaaccagagatgtacaccttcttaa |
349 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
32412722 |
taaaagccctatgtggaaatcgtaaatggtttggtacgggaagtgtattaattgttacaaccagagatgtacacctacttaa |
32412641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 6907865 - 6907789
Alignment:
| Q |
6 |
ggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatat |
82 |
Q |
| |
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|||||||| |||||||||||| |||||| ||| |||||||||||| |||||||||||||||||| |||| ||||| |
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| T |
6907865 |
ggtaaaactaccacagccaaaggcatctacaataaaattcatcgcaaatttgtgcatagaagtttcattgagaatat |
6907789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 32412989 - 32412883
Alignment:
| Q |
1 |
gatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||||| ||| ||||||| |||| ||||||| ||| ||||||| || |||||| |||||||| |
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|
| T |
32412989 |
gatcaggtaaaacaaccacagcaaaagccatctataatcaaatcaatcgcaaatttgcagatagaagcttcattgaaaacattagagaaatctgtgaaaa |
32412890 |
T |
|
| Q |
101 |
tgataat |
107 |
Q |
| |
|
|||||| |
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|
| T |
32412889 |
ggataat |
32412883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 7166685 - 7166440
Alignment:
| Q |
6 |
ggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaatgata |
105 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||| ||| || ||||||||||| ||||||| | ||||||| |||||||| || | |
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| T |
7166685 |
ggtaaaacaaccacagccaaagccatctataatcaaattcatcgcaaatttttgaatagaagtttcattgaaaacgttagagaagtatgtgaaaaggaaa |
7166586 |
T |
|
| Q |
106 |
attatagaggggttattcatttacagnnnnnnnttctttcagatgccctgaaaacaaaggagaagatagatagcattgggttgggagcaaataagttgga |
205 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| |||||| |||||| | |||||| ||||| || ||||| ||| |||| | || |
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|
| T |
7166585 |
---atagagggactattcatttacaacaacaacttctttcagatatcctgaacacaaagaataagatacatagccctgcattggggacaactaagattga |
7166489 |
T |
|
| Q |
206 |
gacaagacttagagggaaaaaggtattcattgtacttgatgatgtgacc |
254 |
Q |
| |
|
|| |||| || |||||||||| || | |||| ||||||||||||||| |
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|
| T |
7166488 |
gaaaagatttcaagggaaaaagttactagttgttcttgatgatgtgacc |
7166440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 3288263 - 3288129
Alignment:
| Q |
219 |
gggaaaaaggtattcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataa |
318 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| | ||| | | ||||||||||| |||| ||||| || || |||||| | ||||||||| ||| |
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| T |
3288263 |
gggaaaaatgtattcgttgtacttgatgatgtgaccacatttgaacagttaaaagccctatgtgcaaatcctgaattctttggtccaggaagtgtattaa |
3288164 |
T |
|
| Q |
319 |
ttgttacaaccagagatgtacaccttcttaattta |
353 |
Q |
| |
|
|| ||||||| |||||||||||||| ||| ||||| |
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| T |
3288163 |
ttattacaactagagatgtacacctacttgattta |
3288129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 341
Target Start/End: Complemental strand, 3409109 - 3409006
Alignment:
| Q |
238 |
tacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaaccagagatgt |
337 |
Q |
| |
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|||||||||||||||| |||||| || |||||||||| || ||||||| | || |||||| |||||||||| |||||||||||||||||||||| |
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| T |
3409109 |
tacttgatgatgtgactgattttcagcaaataaaagccctatgcggaaatcataaattttttggtgctggaagtgtgttaattgttacaaccagagatgt |
3409010 |
T |
|
| Q |
338 |
acac |
341 |
Q |
| |
|
|||| |
|
|
| T |
3409009 |
acac |
3409006 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 3264547 - 3264453
Alignment:
| Q |
6 |
ggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa |
100 |
Q |
| |
|
||||||||||||||||||||| || |||| || | ||| |||||||| |||| | ||| ||||||| | |||||||| ||||||| || |||||| |
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|
| T |
3264547 |
ggtaaaacaaccacagccaaagccgtctacaaccaaatccatcgcaaatttgaggataaaagtttcatcgaaaatattagagaagtttatgaaaa |
3264453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 30415986 - 30416079
Alignment:
| Q |
6 |
ggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaa |
99 |
Q |
| |
|
|||||||| || |||||||| ||||||| |||| |||||||||||| |||||| | ||||||||| | |||||||| |||||| ||||||||| |
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| T |
30415986 |
ggtaaaactacggcagccaaagccatctacaatcaaattcatcgcaaatttgtgtacagaagtttcatcgaaaatattagagaaacttgtgaaa |
30416079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 335
Target Start/End: Complemental strand, 8373641 - 8373419
Alignment:
| Q |
113 |
aggggttattcatttacagnnnnnnnttctttcagatgccctgaaaacaaaggagaagatagatagcattgggttgggagcaaataagttggagacaaga |
212 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| ||| |||||||| || |||||| ||||||||| |||| ||||||| | |||| |||| |
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|
| T |
8373641 |
agggattattcatttacaggaacaacttctttcagatctcctaaaaacaaaagataagatacatagcattgcagtggggataaataagatcgagaaaaga |
8373542 |
T |
|
| Q |
213 |
cttagaggga-aaaaggtattcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagt |
311 |
Q |
| |
|
||| ||||| ||||||| || || |||||||||||||||||| || | || |||||||||| ||| ||||||||| | | ||||||| | |||||| |
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|
| T |
8373541 |
cttc-agggacaaaaggttttaatcgtacttgatgatgtgaccaagtctgagcaattaaaagctctgggtggaaatcctaagttgtttggttcaggaagt |
8373443 |
T |
|
| Q |
312 |
gtaataattgttacaaccagagat |
335 |
Q |
| |
|
||| | ||| ||||||| |||||| |
|
|
| T |
8373442 |
gtattgattattacaactagagat |
8373419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 31060628 - 31060513
Alignment:
| Q |
231 |
ttcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaacca |
330 |
Q |
| |
|
||||| |||||||||||||||||| |||| | |||||||||||||||||| |||| || | |||||| | ||| |||| | ||| ||||||||| |
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|
| T |
31060628 |
ttcatcgtacttgatgatgtgaccaagtttgggaaattaaaagccctgtgtgtaaattgtaagttctttggttcgcgaactgtattgatttttacaacca |
31060529 |
T |
|
| Q |
331 |
gagatgtacaccttct |
346 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
31060528 |
gagatgaacaccttct |
31060513 |
T |
|
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