View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_16 (Length: 356)
Name: NF1962_1D_low_16
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 336
Target Start/End: Complemental strand, 47333369 - 47333048
Alignment:
| Q |
15 |
aatatcttaggacaaccaataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaa |
114 |
Q |
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| T |
47333369 |
aatatcttaggacaaccaataatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaa |
47333270 |
T |
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| Q |
115 |
aattccaaactttcataggtgaactttgttcatgcccttcaactgattctgacaaaatcggcttcgaactccaaaacaaaggaaaagcaagtaatgctcc |
214 |
Q |
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| T |
47333269 |
aattccatactttcataggtgaactttgttcatgcccttcaactgattctgacaaaaccggcttcgaactccaaaacaaaggaaaagcaagtaatgctcc |
47333170 |
T |
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| Q |
215 |
tctaattttcacatcaccaggtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333169 |
tctaattttcacatcaccaggtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaa |
47333070 |
T |
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| Q |
315 |
aaacggtcaaaatcaccgtatt |
336 |
Q |
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| T |
47333069 |
aaacggtcaaaatcaccgtatt |
47333048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 47301763 - 47301704
Alignment:
| Q |
65 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
124 |
Q |
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| T |
47301763 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattccaaac |
47301704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 17841900 - 17841841
Alignment:
| Q |
65 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
124 |
Q |
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| T |
17841900 |
aggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaattccaaac |
17841841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 653540 - 653632
Alignment:
| Q |
40 |
ccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcatag |
132 |
Q |
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| T |
653540 |
ccaaactaggtgcaccaatagcacaaggattaaccatagggttatcaatcccaccctttgcattagggtacacaaagttccacactttaatag |
653632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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