View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_18 (Length: 348)
Name: NF1962_1D_low_18
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 326
Target Start/End: Complemental strand, 3858065 - 3857740
Alignment:
| Q |
2 |
gcaatgggaactgctatgccaaaccttgccccaggttttatcttcatcatcgcatggacctttgggtaattttattatattgggttttgatcatatttca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3858065 |
gcaatgggaactgctatgccaaaccttgccccaggttttatcttcatcatcgcatggacttttgggtaattttattatattgggttttgatcatatttca |
3857966 |
T |
|
| Q |
102 |
ccaatgctataaacagccaaggaggaataaaatgttataattcacatctaagccaaaattaagtaacatgcttaatgttctcaagaaagac-nnnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3857965 |
ccaatgctataaacagccaaggaggaataaaatgttataattcacatctaagccaaaattaagtaacatgcttaatgttctcaagaaagacaaaaaaaaa |
3857866 |
T |
|
| Q |
201 |
gccttttaacttaatcccttggtaactaatttgaaatttttgtatttaccaggttagagaaagttaacttgagcaacaagtatagtacattaaaaatctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3857865 |
gccttttaacttaatcccttggtaactaatttgaaatttttgtatttaccaggttagagaaagttaacttgagcaacaagtatagtacattaaaaatctt |
3857766 |
T |
|
| Q |
301 |
aggaacattgctatgtgtattaggag |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3857765 |
aggaacattgctatgtgtattaggag |
3857740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 41613500 - 41613552
Alignment:
| Q |
2 |
gcaatgggaactgctatgccaaaccttgccccaggttttatcttcatcatcgc |
54 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41613500 |
gcaatgggaacagccatgccaaaccttgccccaggatttatcttcatcatcgc |
41613552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University