View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_2 (Length: 866)
Name: NF1962_1D_low_2
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 34731088 - 34731430
Alignment:
| Q |
18 |
acatcagcaattgtatggagacctgtcatgaattccatgtctacttttggccctattgtaacattcattgcatgtgaaaacagaaaacctcttccatttc |
117 |
Q |
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| T |
34731088 |
acatcagcaattgtatggagacctgtcatgaattccatgtctacttttggccctattgtaacattcattgcatgtgaaaacagaaaacctcttccatttc |
34731187 |
T |
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| Q |
118 |
ttccctgaaattataaatcaactttgaatcactaatttgttgcctaaacatgttattataaattgatgaagttcaaatccaaaatatctaacattcttac |
217 |
Q |
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| T |
34731188 |
ttccctgaaattataaatcaactttgaatcactaatttgttgcctaaacatgttattataaattgatcaagttcaaatccaaaatatctaacattcttac |
34731287 |
T |
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| Q |
218 |
aaaa--------ctatgtgttagaaaataagagtaacaatatttattcaaccatttttaaataattttgtgataatcnnnnnnnccctctttttattgaa |
309 |
Q |
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| T |
34731288 |
aaaagtaagtgtctatgtgttagaaaataagagtaacgatatttattcaaccatttttaaataattttgtgataatc-ttttttccctctttttattgaa |
34731386 |
T |
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| Q |
310 |
taaaaacaatagaaagacaatacgaatatgaaactaaattgtcc |
353 |
Q |
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| T |
34731387 |
taaaaataatagaaagacaatgcaaatatgaaactaagttgtcc |
34731430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 433 - 722
Target Start/End: Original strand, 34731499 - 34731784
Alignment:
| Q |
433 |
gtaggtgaagcacatgtttatactgtattcatcgaacatttttccaaatcttaatcttaatagataaaggtgagagagagtgttcacctgaaaggttttt |
532 |
Q |
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| T |
34731499 |
gtaggtgaaccacatgtttatactgtattcatcgaacatttttccaaatcttaatcttaatagataaaggtgaga--gagtgttcacctgaaaggttttt |
34731596 |
T |
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| Q |
533 |
gaaataacatcatcatgaacggcaacatggtttctacaattaaagcaaaaatacaatcttgttccaatcaaattctccatttcaatgcttttattagctc |
632 |
Q |
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| T |
34731597 |
gaaataacatcatcatgaacggcaacatggtttctacaattaaagcaaaaatacaatcttgttccaatcaaattctccatttcaatgcttttattagctc |
34731696 |
T |
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| Q |
633 |
aacccttcacgaaagtagctataaaatggcaagaacannnnnnnnnnnncaaacgcagataaaagagatctcaaacttgttttgaggata |
722 |
Q |
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| T |
34731697 |
aacccttcatgaaagtagctataaaatggcaagaaca--acacacacaccaaacgcagataaaagagatctcaaacttgttttgaggata |
34731784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 782 - 844
Target Start/End: Original strand, 34731813 - 34731875
Alignment:
| Q |
782 |
ctcactttacaagttaaaagagattattacttgtcagaaaatctgattagtgaagttactagt |
844 |
Q |
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| T |
34731813 |
ctcactttacaagttaaaagagattattccttgtcagaaaatctgattagtgaagttactagt |
34731875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 34739120 - 34739263
Alignment:
| Q |
17 |
gacatcagcaattgtatggagacctgtcatgaattccatgtctacttttggccctattgtaacattcattgcatgtgaaaacagaaaacctcttccattt |
116 |
Q |
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||||||||||| ||||| ||||||||||||| || | |||| ||||| |||||| | ||||||||||||||| ||||||||||||| ||||||| ||| |
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| T |
34739120 |
gacatcagcaactgtataaagacctgtcatgagttgcctgtcctctttttgccctactttaacattcattgcatttgaaaacagaaaagctcttcctttt |
34739219 |
T |
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| Q |
117 |
cttccctgaaattataaatcaactttgaatcactaatttgttgc |
160 |
Q |
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| T |
34739220 |
cttgcctgaaattattaacaaacttagtatcaccgatttgttgc |
34739263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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