View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_20 (Length: 338)
Name: NF1962_1D_low_20
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_20 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 2238619 - 2238956
Alignment:
| Q |
1 |
aaacaagctcaccagttctcctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttccgccactgttggagttgctctagc |
100 |
Q |
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| T |
2238619 |
aaacaagctcaccagttctcctttcaagaccaataacaacagcaggtccataaattccaacaatcaacaaatcttcagccacagttggagttgctctagc |
2238718 |
T |
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| Q |
101 |
cactgtccaatttgcattaattataaatccagttgtattcaaacctgtcaatttctccaagttttgcttccaaacaagtgacccatcaatttgtttaatt |
200 |
Q |
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| T |
2238719 |
caatgtccaatttgcattaattataaatccagttgtatttaaacctgtcaatttctccaagttttgcttccaaacaagtgatccatcaacttgtttaatt |
2238818 |
T |
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| Q |
201 |
gcatatatgttaccattccaacttggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgtttgcatagaatttccacttcaaac |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2238819 |
gcatatatgttaccattccagcttggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgtttgcatagaatttccacttcaaac |
2238918 |
T |
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| Q |
301 |
ttagtttaggtaccgtttctatatttatcttttgttcc |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2238919 |
ttagtttaggtaccgtttctatatttatcttttgttcc |
2238956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 2229662 - 2229994
Alignment:
| Q |
5 |
aagctcaccagttctcctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttccgccactgttggagttgctctagccact |
104 |
Q |
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| T |
2229662 |
aagctcaccagttctcctttcaagaccaataacaacagcaggtccataaattccaacaatcaataaatcttcagccacagttggagttgctctagccact |
2229761 |
T |
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| Q |
105 |
gtccaatttgcattaattataaatccagttgtattcaaacctgtcaatttctccaagttttgcttccaaacaagtgacccatcaatttgtttaattgcat |
204 |
Q |
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| T |
2229762 |
gaccaatttacagctttgataattccagttgcatttaaacctgtcaattcctccaaattttgcttccaaacaagtgatccatcaatttgtttaattgcat |
2229861 |
T |
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| Q |
205 |
atatgttaccattccaacttggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgtttgcatagaatttccacttcaaacttag |
304 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
2229862 |
atatgttaccattccagcatggaaaataaattgtaccattgtatattgttggtgttgctgtaatatctttgcctgcattgaatttccacttcaaacttag |
2229961 |
T |
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| Q |
305 |
tttaggtaccgtttctatatttatcttttgttc |
337 |
Q |
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| T |
2229962 |
gttagaaaccgtttctggattgatcttgtgttc |
2229994 |
T |
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