View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_21 (Length: 338)
Name: NF1962_1D_low_21
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 8139366 - 8139661
Alignment:
| Q |
21 |
atcactgtttttggaacgatgtctctgctcttgtatgagtcttgatcatttactaatgtttcttgtgtgtaatttgacatcttctctcatgcctttcgac |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8139366 |
atcactgtttttggaatgatgtctctgctcttgtatgagtcttgatcatttagtaatgtttctt-------------------ctctcatgcctttcgac |
8139446 |
T |
|
| Q |
121 |
cgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatattcactcacaaccataaatgagt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139447 |
cgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatattcactcacaaccataaatgagt |
8139546 |
T |
|
| Q |
221 |
tttaactctgattgttctaaca--ggtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagt |
318 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8139547 |
tttaactctgattgttctaacagtggtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagt |
8139646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 329
Target Start/End: Complemental strand, 7499230 - 7499040
Alignment:
| Q |
145 |
tatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatattcactcacaaccataaatgagttttaactctgattgttctaaca-- |
242 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
7499230 |
tatgctaaatgaacaggtaaccttcaaaatcaaaactttatggaattcacatat----tcacaaccataaacgagtttttattctgattgttctaacagt |
7499135 |
T |
|
| Q |
243 |
ggtcgtcgctctc--------tgggaacatcatggcaagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaa |
329 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||| || ||||| |||||| |||||||||||| |
|
|
| T |
7499134 |
ggtcgtcgctctctgattgtgtgggaatatcatggcaagaacaagtgcagaagaaagttccgggtgggtaaagtggcatctaatgtcatggaaaa |
7499040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 7499560 - 7499460
Alignment:
| Q |
19 |
acatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatcatttactaatgtttcttgtgtgtaatttgacatcttctctcatgcctttcg |
118 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7499560 |
acatcactgtttttggaatgatgtttctgctcttttatgagtcttgatcatgtagtaatgtttcttgtgtgtaatttgacatcttctctcacgcctttcg |
7499461 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
|
| |
|
|
| T |
7499460 |
a |
7499460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 7502297 - 7502223
Alignment:
| Q |
124 |
actcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatat |
198 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| |||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
7502297 |
actcttttctggtgagggccctatgtgcattgaagaggtaaacttcaaaatcagaactttattgaattcacatat |
7502223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 7502172 - 7502114
Alignment:
| Q |
271 |
aagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaa |
329 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||| || ||||||||||||||||| |
|
|
| T |
7502172 |
aagaacaagtgcagaagcaagcaccaggcggggaaagtgacgtctagtgtcatggaaaa |
7502114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University