View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_25 (Length: 311)
Name: NF1962_1D_low_25
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 2492497 - 2492261
Alignment:
| Q |
23 |
agaagtactgaacttcaatcaaagtgagaagaggtatggaatggctcagtgcacaagagatatcagtagaaaggactgcaaaaggtgtctggattctcag |
122 |
Q |
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| T |
2492497 |
agaagtactgaacttcaatcaaagtgagaagaggtatggaatggctcagtgcacaagagatattagtagaaaggactgcaaaaggtgtctggattctcag |
2492398 |
T |
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| Q |
123 |
ctgattaacatcagaacaattagaaataatacaagatgggaaatttatggatcaaattgtttcacgtggtatgatgactatcagttttatgctaatgtat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
2492397 |
ctgattaacatcagaacaattagaaataatacaagatgggaaatttatggatccaattgtttcatgtggtatgatgactatcagttttatgctagtgtat |
2492298 |
T |
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| Q |
223 |
cgtttcttccaagtggtgagtcctttgacttttggtt |
259 |
Q |
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| T |
2492297 |
cctttcttccaagtggtgagtcctttgacttttggtt |
2492261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 2489213 - 2488977
Alignment:
| Q |
23 |
agaagtactgaacttcaatcaaagtgagaagaggtatggaatggctcagtgcacaagagatatcagtagaaaggactgcaaaaggtgtctggattctcag |
122 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| || ||| ||| |
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| T |
2489213 |
agaagaactgaactttaatcaaagtgagaagaggtatggaatggctcagtgcacaagagatatcaatagacaggactgcagaaggtgccttgatgatcaa |
2489114 |
T |
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| Q |
123 |
ctgattaacatcaga---acaattagaaataatacaagatgggaaatttatggatcaaattgtttcacgtggtatgatgactatcagttttatgctaatg |
219 |
Q |
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|| || || || |||||| ||||||| | ||||||||||||||||||| | |||||||||| ||||||| |||||||||| ||||||||||||| |
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| T |
2489113 |
ctagtttctttcggagctacaattggaaataaaagaagatgggaaatttatggacccaattgtttcatgtggtataatgactatcaattttatgctaatg |
2489014 |
T |
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| Q |
220 |
tatcgtttcttccaagtggtgagtcctttgacttttg |
256 |
Q |
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|||| ||||| |||||||||||||||||||||||| |
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| T |
2489013 |
tatccactcttcaaagtggtgagtcctttgacttttg |
2488977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 2495624 - 2495385
Alignment:
| Q |
23 |
agaagtactgaacttcaatcaaagtgagaagaggtatggaatggctcagtgcacaagagatatcagtagaaaggactgcaaaaggtgtctggattctcag |
122 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||| ||||||| ||||| |||| |
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| T |
2495624 |
agaagtactgaactttaatcaaagtgagaagaggtatggtatgacccagtgtacaagagatatcagtagaaaggactgcagaaggtgtttggatgctcaa |
2495525 |
T |
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| Q |
123 |
ctgattaacatcagaacaatta---gaaataatacaagatgggaaatttatggatcaaattgtttcacgtggtatgatgactatcagttttatgctaatg |
219 |
Q |
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|| | || || ||| ||| ||||||| | |||||||||| || |||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
2495524 |
ttggtcaatttcgaaacttttattggaaataaaagaagatgggaagttcatggattaaattgtttcatgtggtatgatgactatcagttttattctaatg |
2495425 |
T |
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| Q |
220 |
tatcgtttcttccaagtggtgagtcctttgacttttggtt |
259 |
Q |
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| || ||||| ||||||||||||||||||||||||||| |
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| T |
2495424 |
tctccactcttctaagtggtgagtcctttgacttttggtt |
2495385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 29982102 - 29982139
Alignment:
| Q |
255 |
tggtttatacactgccatcactattggtgtggtaatga |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29982102 |
tggtttatacactgccatcactattggtgtggtaatga |
29982139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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