View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_low_26 (Length: 304)

Name: NF1962_1D_low_26
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_low_26
NF1962_1D_low_26
[»] chr8 (1 HSPs)
chr8 (21-304)||(41735698-41735981)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 41735698 - 41735981
Alignment:
Q  21 gtaagccaggtcatcatgcacctcagtgcaaacatcgcaagaggaaagacaatcctcttaaagctaacttgactgaatgaggtgacactattgatgtggt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41735698 gtaagccaggtcatcatgcacctcagtgcaaacatcgcaagaggaaagacaatcctcttaaagctaacttgactgaatgaggtgacactattgatgtggt 41735797  T
Q  121 taattataaattgtttggaatgggagctgggaggtgcatgatgatatggattaccacaaacataactaattttcttttgcaggtgagattaataacatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41735798 taattataaattgtttggaatgggagctgggaggtgcatgatgatatggattaccacaaacataactaattttcttttgcaggtgagattaataacatga 41735897  T
Q  221 ggaacataattgttattactattgtgattaggcttgtgatcatgactctttttgtgagaattattatgagtcttcagattttct 304  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41735898 ggaacataattgttattactattgtgattaggcttgtgatcataactctttttgtgagaattattatgagtcttcagattttct 41735981  T

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