View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_low_30 (Length: 285)

Name: NF1962_1D_low_30
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_low_30
NF1962_1D_low_30
[»] chr4 (13 HSPs)
chr4 (1-211)||(31151083-31151292)
chr4 (26-191)||(31488783-31488948)
chr4 (54-191)||(31030513-31030650)
chr4 (54-191)||(31020632-31020769)
chr4 (26-185)||(31160006-31160165)
chr4 (4-197)||(31496132-31496325)
chr4 (20-185)||(31529259-31529424)
chr4 (20-185)||(31023505-31023670)
chr4 (4-186)||(31476203-31476385)
chr4 (4-113)||(31162363-31162471)
chr4 (235-274)||(31151316-31151355)
chr4 (8-191)||(31501308-31501491)
chr4 (64-185)||(31244241-31244362)
[»] scaffold1749 (1 HSPs)
scaffold1749 (26-200)||(879-1053)
[»] scaffold0428 (1 HSPs)
scaffold0428 (26-200)||(9640-9814)
[»] chr6 (8 HSPs)
chr6 (53-187)||(12785699-12785833)
chr6 (76-180)||(12782283-12782387)
chr6 (53-187)||(12781509-12781643)
chr6 (26-199)||(33412651-33412824)
chr6 (159-205)||(9169557-9169603)
chr6 (26-199)||(33265615-33265788)
chr6 (26-199)||(33274759-33274932)
chr6 (91-199)||(33403409-33403517)
[»] chr2 (1 HSPs)
chr2 (1-192)||(17437870-17438061)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 31151083 - 31151292
Alignment:
Q  1 aaaaccacaacaaaaatcagagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaa 100  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151083 aaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaa 31151182  T
Q  101 tgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151183 tg-attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg 31151281  T
Q  201 agatgacgaga 211  Q
    |||||||||||    
T  31151282 agatgacgaga 31151292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 31488948 - 31488783
Alignment:
Q  26 cttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaa 125  Q
    |||||||||| |||  |||||| ||  |||| ||||||||||| |  |||||||| ||||| || || | |||||||| ||||||||| |||||||||||    
T  31488948 cttcaattgcacgaatgagctcgggtgctatcgattcacctttttgaagcttagtgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaa 31488849  T
Q  126 aagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatt 191  Q
    |||||||||||| ||||||| ||| ||||||| |||||| ||| ||||||||||||||||||||||    
T  31488848 aagatgatcagtaaagttgaagcgagtatcttcacctctgaaggtgacaaacacgtcataataatt 31488783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 31030513 - 31030650
Alignment:
Q  54 tatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgta 153  Q
    ||||||||||||||| |  || ||||| || || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| |||    
T  31030513 tatggattcacctttttgaagattagtgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagta 31030612  T
Q  154 tctttacctctaaagctgacaaacacgtcataataatt 191  Q
    ||||  ||||||||| |||||||||| |||||||||||    
T  31030613 tcttcgcctctaaaggtgacaaacacatcataataatt 31030650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 31020632 - 31020769
Alignment:
Q  54 tatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgta 153  Q
    ||||||||||||||| |  || ||||  || || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| |||    
T  31020632 tatggattcacctttttgaagattagcgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagta 31020731  T
Q  154 tctttacctctaaagctgacaaacacgtcataataatt 191  Q
    ||||  ||||||||| |||||||||| |||||||||||    
T  31020732 tcttcgcctctaaaggtgacaaacacatcataataatt 31020769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 31160006 - 31160165
Alignment:
Q  26 cttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaa 125  Q
    ||||||||||  || ||||||| ||  |||||||||||||||||||||| |||| |||||||||||||| ||  |||| ||||||||| |||||||||||    
T  31160006 cttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaa 31160105  T
Q  126 aagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcata 185  Q
    ||||||||| |  || |||  | |||| ||||  ||||||||||| ||||| ||||||||    
T  31160106 aagatgatcggcaaaattgttgtgtgtgtcttggcctctaaagctcacaaaaacgtcata 31160165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 31496325 - 31496132
Alignment:
Q  4 accacaacaaaaatcagagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgc 103  Q
    ||||||||||||| | |||||| ||||||||| | | |||||| |||  ||||||||||||||||    || ||||| ||||| || |||| | ||||||    
T  31496325 accacaacaaaaacctgagagttttcaattgcacaaaggagcttaggtcctatggattcaccttttggaagattagtgtcatctctaaatgcagaaatgc 31496226  T
Q  104 attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctcct 197  Q
     || ||| || | || | ||||||||||||||||||| |||  ||| || || | |||||||||| |||||||||||||||||| ||| |||||    
T  31496225 cttctctgtggaaggtatcaaaaagatgatcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaacacgtcataatgattgctcct 31496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 31529259 - 31529424
Alignment:
Q  20 gagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggc 119  Q
    ||||| |||| || || ||| |||| |||||  |||| |||||||||||||| |||||||| ||||| || |||| || ||||| | || |||| |||||    
T  31529259 gagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagtgtcatctctaaatgcaacaatgcctcttatttggagggc 31529358  T
Q  120 agcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcata 185  Q
     | |||||||||||||||||||||||  ||||| |||   ||||| ||||||| ||||||||||||    
T  31529359 ggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacacgtcata 31529424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 31023505 - 31023670
Alignment:
Q  20 gagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggc 119  Q
    ||||| ||||||||||  |||||||||  ||  | ||||||||||||||||| ||| | | ||| ||| |||||| ||  || | ||||||| | | ||     
T  31023505 gagaggcttcaattgcatgagggagctatggtgcaatggattcacctttcttgagcattgcatcgtccttgaatgcaatgataccttttcttcggaagga 31023604  T
Q  120 agcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcata 185  Q
    |||||||||||||||| ||||||||  ||| || ||||||||| | ||||| ||||||||||||||    
T  31023605 agcaaaaagatgatcaatgaagttgtagcgagtgtctttacctttgaagctcacaaacacgtcata 31023670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 31476385 - 31476203
Alignment:
Q  4 accacaacaaaaatcagagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgc 103  Q
    |||||||| |||| | ||||  ||||||||||  ||  ||| |||||  |||||||||||||||| |  || ||||| |||||||| |||| |||||  |    
T  31476385 accacaacgaaaacctgagacccttcaattgcatgaaagagttcaggtgctatggattcacctttttgaagattagtgtcatccctaaatgcaaaaacac 31476286  T
Q  104 attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataa 186  Q
     ||||  ||  |||||| |||||||   ||||||||| |||  ||| ||||||| |||||| ||||| |||||||||||||||    
T  31476285 ctttttcttcgagggcatcaaaaaggaaatcagtgaaattgttgcgagtatcttcacctctgaagctcacaaacacgtcataa 31476203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 31162363 - 31162471
Alignment:
Q  4 accacaacaaaaatcagagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgc 103  Q
    |||||||  ||||||||||||||| | ||||||| | ||||||| |   | |||||||||||||| || ||||||| ||||||||| |||| |||||| |    
T  31162363 accacaatgaaaatcagagagtct-cgattgctccaaggagctctgatccaatggattcacctttgttgagcttagaatcatccctaaatgcaaaaatac 31162461  T
Q  104 attttctttg 113  Q
     |||||||||    
T  31162462 cttttctttg 31162471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 31151316 - 31151355
Alignment:
Q  235 attttgatgatactattattactgctggtgatgtccatct 274  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  31151316 attttgatgatactattattactgctggtgctggccatct 31151355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 31501491 - 31501308
Alignment:
Q  8 caacaaaaatcagagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattt 107  Q
    ||||||||||   ||| ||||||||||| ||| | ||||| |   ||||||||||||||||    || ||||| |||||||| |||| || ||||| ||     
T  31501491 caacaaaaatataagaatcttcaattgcacgaagaagctcggatgctatggattcaccttttggaagattagtgtcatccctaaatgcaagaatgccttc 31501392  T
Q  108 tctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatt 191  Q
    ||| |  | |||| |||||||||||| |||||| |||  ||| || |||| |||||||||  |||||||| | |||||||||||    
T  31501391 tctgttgaaggcatcaaaaagatgataagtgaaattgttgcgagtgtcttcacctctaaaagtgacaaacgcatcataataatt 31501308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 31244362 - 31244241
Alignment:
Q  64 cctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctc 163  Q
    |||||||| ||||| |||||||||||||| | || ||||| |||| | || || |   ||||||| ||||||||||| |||  |||||| ||   |||||    
T  31244362 cctttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggagagtgccaaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctc 31244263  T
Q  164 taaagctgacaaacacgtcata 185  Q
    ||||||| |||||||| |||||    
T  31244262 taaagctcacaaacacatcata 31244241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 879 - 1053
Alignment:
Q  26 cttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaa 125  Q
    |||| |||| |||| ||||||||||  ||||||||||||| ||    || || || ||||||||||| | | |||| | ||||||||  |||||||||||    
T  879 cttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttttctttcaagggcagcaaa 978  T
Q  126 aagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg 200  Q
    ||||  || |||||| |||  ||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||    
T  979 aagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttgg 1053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 9640 - 9814
Alignment:
Q  26 cttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaa 125  Q
    |||| |||| |||| ||||||||||  ||||||||||||| ||    || || || ||||||||||| | | |||| | ||||||||  |||||||||||    
T  9640 cttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttttctttcaagggcagcaaa 9739  T
Q  126 aagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg 200  Q
    ||||  || |||||| |||  ||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||    
T  9740 aagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttgg 9814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 12785699 - 12785833
Alignment:
Q  53 ctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgt 152  Q
    ||||| |||||||||| || || ||||| ||||| ||||||| |  ||||| |  |||||| |||||||||||||||||||| ||||| |||| ||||||    
T  12785699 ctatgaattcaccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcaaaaagatgatcggtgaaattgaagcgtgt 12785798  T
Q  153 atctttacctctaaagctgacaaacacgtcataat 187  Q
     |||   ||||||||||| ||||||||||||||||    
T  12785799 gtctgggcctctaaagctcacaaacacgtcataat 12785833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 12782283 - 12782387
Alignment:
Q  76 ttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaa 175  Q
    ||||| ||||| ||||||| |||||| | ||||||||| |||||| ||||||||||||||||||| ||||  ||||| ||| | ||||| ||||| ||||    
T  12782283 ttagtgtcatctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatcagtgaaattgaaacgtgtgtctgtgcctctgaagctcacaa 12782382  T
Q  176 acacg 180  Q
    |||||    
T  12782383 acacg 12782387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 12781509 - 12781643
Alignment:
Q  53 ctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgt 152  Q
    ||||| |||| ||||| || || ||||| ||||| ||||||| |  ||||| |  |||||| ||||||||| ||| |||||| ||||| |||| ||||||    
T  12781509 ctatgaattcgccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcacaaaaatgatcggtgaaattgaagcgtgt 12781608  T
Q  153 atctttacctctaaagctgacaaacacgtcataat 187  Q
     |||   ||||||||||| ||||||||||||||||    
T  12781609 gtctgggcctctaaagctcacaaacacgtcataat 12781643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 33412651 - 33412824
Alignment:
Q  26 cttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaa 125  Q
    |||| ||||| ||| ||||||||||  |||||  ||||||||| || || || || |||||||| |||| | |||| | |||  |||  || ||| ||||    
T  33412651 cttcgattgcacgaaggagctcaggtcctatgacttcaccttttttaagatttgtgtcatccctaaatgcataaatacctttggtttcaagtgcatcaaa 33412750  T
Q  126 aagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttg 199  Q
    ||||| ||||||||| |||  ||| || |||| |||||| ||| |||||||||| |||||||||||||| ||||    
T  33412751 aagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaacacatcataataatttcttcttg 33412824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 9169557 - 9169603
Alignment:
Q  159 acctctaaagctgacaaacacgtcataataatttctccttggagatg 205  Q
    |||||||||| ||| |||||| ||||||| |||||||||||||||||    
T  9169557 acctctaaaggtgaaaaacacatcataatgatttctccttggagatg 9169603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 33265615 - 33265788
Alignment:
Q  26 cttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaa 125  Q
    |||| ||||||||| ||||||| ||  | ||||||||||||||    || ||||| ||||||   |||  || ||||| |||| |||| |||||| ||||    
T  33265615 cttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaa 33265714  T
Q  126 aagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttg 199  Q
    ||||  ||| ||||| |||   || ||||||| |||||| ||| ||||||| || |||||||||||||| ||||    
T  33265715 aagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataatttcttcttg 33265788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 33274759 - 33274932
Alignment:
Q  26 cttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaa 125  Q
    |||| ||||||||| ||||||| ||  | ||||||||||||||    || ||||| ||||||   |||  || ||||| |||| |||| |||||| ||||    
T  33274759 cttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaa 33274858  T
Q  126 aagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttg 199  Q
    ||||  ||| ||||| |||   || ||||||| |||||| ||| ||||||| || |||||||||||||| ||||    
T  33274859 aagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaatacatcataataatttcttcttg 33274932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 33403409 - 33403517
Alignment:
Q  91 aatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataat 190  Q
    |||| |||||||| |||| |||  |||||| ||||||||  ||||||||| |||   || || |||| |||||||||| ||| |||||| || |||||||    
T  33403409 aatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttccgagtgtcttcacctctaaaggtgataaacacatcgtaataat 33403508  T
Q  191 ttctccttg 199  Q
    |||| ||||    
T  33403509 ttcttcttg 33403517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 17438061 - 17437870
Alignment:
Q  1 aaaaccacaacaaaaatcagagagtcttcaattgctcgagggagctcagggtctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaa 100  Q
    |||||| ||||||||| | ||||  |||| ||||||||| | |||||||   |||||||||||||||| |  || ||||| ||||| |  |||| |||||    
T  17438061 aaaaccgcaacaaaaacctgagatccttctattgctcgaagaagctcagatcctatggattcacctttttgaagattagtgtcatctcgaaatgcaaaaa 17437962  T
Q  101 tgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataattt 192  Q
    ||  ||||||||  |||||  ||||||||  ||||||||| |||  ||| ||||||| |||||||||| |||||||||| ||||||| ||||    
T  17437961 tgtcttttctttcaagggcgtcaaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaacacatcataatgattt 17437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University