View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_31 (Length: 278)
Name: NF1962_1D_low_31
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_31 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 3657170 - 3657422
Alignment:
| Q |
33 |
atttacagcaccaaataccaattagacaaagtccaatcaagttc-----------agtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg |
121 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3657170 |
atttacagaaccaaataccgattagacagagtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg |
3657269 |
T |
|
| Q |
122 |
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcctgctctccattttaagtggcaatgcagctgagaacagaagcttctca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3657270 |
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcttgctctccattttaagcggcaatgcagctgagaacagaagcttctca |
3657369 |
T |
|
| Q |
222 |
tgatgtacctgaaactgctctttcagtcagtcaatctccataaccactgctacgcgt |
278 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3657370 |
tgatgtacctgaaactgctctt----tcagtcaatctccataaccactgctacgcgt |
3657422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 278
Target Start/End: Original strand, 3649140 - 3649311
Alignment:
| Q |
94 |
caaatgtaaacaaacaaagccttaaatgataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaa |
189 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| || ||||| ||||| |||| |
|
|
| T |
3649140 |
caaatgtaaacaaacaaagccttacatgataatgttatgacattt-------------tcacacttttactcttcaaatcagttctgctttccatcttaa |
3649226 |
T |
|
| Q |
190 |
gtggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcagtcaatctccataaccactgctacgcgt |
278 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
3649227 |
gtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt----tcactcaatctccataaccactactacgcgt |
3649311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3647681 - 3647738
Alignment:
| Q |
1 |
ttgttgagaaggtagcattacaaatccatttaatttacagcaccaaataccaattaga |
58 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3647681 |
ttgttgagaagggagcattacaaatccatttaatttacaaaaccaaataccaattaga |
3647738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3655633 - 3655690
Alignment:
| Q |
1 |
ttgttgagaaggtagcattacaaatccatttaatttacagcaccaaataccaattaga |
58 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3655633 |
ttgttgagaagggagcattgcaaatccatttaatttacagaaccaaataccaattaga |
3655690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 3659537 - 3659631
Alignment:
| Q |
130 |
atgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaagtggcaatgcagctgagaacagaagcttctc |
220 |
Q |
| |
|
|||||||||| || |||| | ||||| || ||||||||||| || ||||| ||||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
3659537 |
atgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctc |
3659631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 3653319 - 3653391
Alignment:
| Q |
174 |
ctgctctccattttaagtggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctttca |
246 |
Q |
| |
|
||||| ||||||||||| |||| || ||| |||||||||| |||||| || ||| | ||||||| |||||||| |
|
|
| T |
3653319 |
ctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttca |
3653391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 36164535 - 36164579
Alignment:
| Q |
94 |
caaatgtaaacaaacaaagccttaaatgataattttatgacattt |
138 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
36164535 |
caaatgtaaacaatcaaagccttacatgataatgttatgacattt |
36164579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University