View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_32 (Length: 277)
Name: NF1962_1D_low_32
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_32 |
 | |
|
| [»] chr5 (21 HSPs) |
| |
|
| [»] scaffold0692 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-153; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 10746800 - 10746528
Alignment:
| Q |
5 |
attatactagggacatcgtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10746800 |
attatactagggacatcgtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaa |
10746701 |
T |
|
| Q |
105 |
tccttatgctggaaatgcttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10746700 |
tccttatgctggaaatgcttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataa |
10746601 |
T |
|
| Q |
205 |
tcttataaatatcttggacccgcatcttctatcaagagatgcagtagaagatggaaacaatgagaatcttatt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10746600 |
tcttataaatatcttggacccgcatcttctatcaagagatgcagtagaagatggaaacaatgagaatcttatt |
10746528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 10716750 - 10716485
Alignment:
| Q |
9 |
tactagggacatcgtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatcct |
108 |
Q |
| |
|
|||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
10716750 |
tactagtggcattgtattaatagcttttgctacatgtttcagagtatggaatgggttctgaagtgtccacatgtggtgacatgtatagctttggaatcct |
10716651 |
T |
|
| Q |
109 |
tatgctggaaatgcttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatctt |
208 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
10716650 |
tatgttggaaatgcttaccggtagaagacccactgatgaattttttcaagatggtcaaaatctgcataactttgttgcatcttcatttcctgacaatctt |
10716551 |
T |
|
| Q |
209 |
ataaatatcttggacccgcatcttctatcaagagatgcagtagaagatggaaacaatgagaatcttatt |
277 |
Q |
| |
|
||||| || ||||| || |||||| ||||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
10716550 |
ataaagattttggatccacatcttgtatcaagagatgc---agaagatggaagcatagagaatcttatt |
10716485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 10612146 - 10612369
Alignment:
| Q |
9 |
tactagggacatcgtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatcct |
108 |
Q |
| |
|
|||||| | ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10612146 |
tactagtggcattgtattaatagcttttgctacatgttttagagtatgggatgggtgctgaagtatccacatgtggtgatatgtatagctttggaatcct |
10612245 |
T |
|
| Q |
109 |
tatgctggaaatgcttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatctt |
208 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| | |||||||| ||||||| |
|
|
| T |
10612246 |
tatgttggaaatgcttaccggtagaagacccactgatgaggcatttgaagatgatcaaaatctacataactttgttgcaacactgtttcctgctaatctt |
10612345 |
T |
|
| Q |
209 |
ataaatatcttggacccgcatctt |
232 |
Q |
| |
|
||||| ||||||||||| |||||| |
|
|
| T |
10612346 |
ataaagatcttggacccacatctt |
10612369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 10565452 - 10565678
Alignment:
| Q |
22 |
gtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatg |
121 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
10565452 |
gtatgaataacttttgttacatgttttagagtatgggatgggtgctgaagtatccacatgtggtgatatgtatagctttggaatctttatgttggaaatg |
10565551 |
T |
|
| Q |
122 |
cttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttgg |
221 |
Q |
| |
|
||||| |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || |||| |
|
|
| T |
10565552 |
cttaccggtagaagacccactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaatatcatttcctggtaatcttaagaagattttgg |
10565651 |
T |
|
| Q |
222 |
acccgcatcttctatcaagagatgcag |
248 |
Q |
| |
|
|||| |||||| |||||| ||||||| |
|
|
| T |
10565652 |
acccacatcttttatcaatggatgcag |
10565678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 10740186 - 10739963
Alignment:
| Q |
22 |
gtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatg |
121 |
Q |
| |
|
||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
10740186 |
gtattaacaacttttgctgcatgttttagagtatggaatgggttctgaagtgtcaacatctggtgacatgtatagctttggaatccttatgttggaaata |
10740087 |
T |
|
| Q |
122 |
cttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttgg |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||| ||| ||||| | || |||| |
|
|
| T |
10740086 |
cttaccggtagaagacccactgatgaagtttttcaagatggtcaaaatctacataactttgtagcaacttcgtttcctggtaacattatagagattttgg |
10739987 |
T |
|
| Q |
222 |
acccgcatcttctatcaagagatg |
245 |
Q |
| |
|
|||| |||||| | ||||||||| |
|
|
| T |
10739986 |
acccacatcttgaagcaagagatg |
10739963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 11048412 - 11048241
Alignment:
| Q |
32 |
cttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggta |
131 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
11048412 |
ctttttctacatgttttagagtatggaatgggttctgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaatgcttaccggta |
11048313 |
T |
|
| Q |
132 |
gaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgata |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
11048312 |
gaagacccacccatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcacttcctgata |
11048241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 10581445 - 10581662
Alignment:
| Q |
23 |
tattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgc |
122 |
Q |
| |
|
|||||| | |||||| |||||| |||||||||||| |||||||||||||| || ||| |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
10581445 |
tattaacaccttttgttacatgctttagagtatgggatgggttctgaagtatctgcatgtggtgacatgtatagctttggaatccttatgttggaaatgc |
10581544 |
T |
|
| Q |
123 |
ttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttgga |
222 |
Q |
| |
|
|||| |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || ||||| |
|
|
| T |
10581545 |
ttaccggtagaagacccactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaatatcatttcctgctaatcttaagaaaattttgga |
10581644 |
T |
|
| Q |
223 |
cccgcatcttctatcaag |
240 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
10581645 |
cccacatcttttatcaag |
10581662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 10605211 - 10605424
Alignment:
| Q |
32 |
cttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggta |
131 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| | || |||||| |||||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
10605211 |
ctttttctacatgtttcagagtatggaatgggttctgaagtgtctatatgtggtgacatgtatagctttggaatcctgatgttggaaatacttactggta |
10605310 |
T |
|
| Q |
132 |
gaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatct |
231 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||| | | || |||||||| || || |
|
|
| T |
10605311 |
ggagacccactgatgaagtttttcaagatggtcaaaatctgcataactttgttgcaacttcatttcctgataatattaaagagattttggacccacacct |
10605410 |
T |
|
| Q |
232 |
tctatcaagagatg |
245 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
10605411 |
tgtaacaagagatg |
10605424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 10762584 - 10762378
Alignment:
| Q |
39 |
tacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacc |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||| || |||| ||||||||||||||||| |
|
|
| T |
10762584 |
tacatgttttagagtatggaatgggttctgaagtgtcaacatctggtgacatgtatagctttggagtccttatgttgaaaatacttactggtagaagacc |
10762485 |
T |
|
| Q |
139 |
cactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatcttctatca |
238 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||| ||| ||||| |||| |||||||| |||||| | || |
|
|
| T |
10762484 |
cactgatgaagtttttcaagatggtcaaaatctgcataactttgtagcagcttcatttcctggtaacattatagatattttggacccacatcttgaagca |
10762385 |
T |
|
| Q |
239 |
agagatg |
245 |
Q |
| |
|
||||||| |
|
|
| T |
10762384 |
agagatg |
10762378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 10588220 - 10588010
Alignment:
| Q |
22 |
gtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatg |
121 |
Q |
| |
|
||||||| ||||||||| || || ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| || |||||| |||||||| |
|
|
| T |
10588220 |
gtattaaatgcttttgcttaatcttgtagagtatggaatgggttctgaagtatccacatctggtgacatgtatagctttgggatgcttatgttggaaatg |
10588121 |
T |
|
| Q |
122 |
cttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttgg |
221 |
Q |
| |
|
| || || ||||||||||| |||||| | |||||||||||||||||||| |||| ||||||| || || |||| |||||||||||| | || |||| |
|
|
| T |
10588120 |
atcaccggaagaagacccacagatgaaatgtttgaagatggtcaaaatctacatatgtttgttgaaagttcatttcaagataatcttatacagattttgg |
10588021 |
T |
|
| Q |
222 |
acccgcatctt |
232 |
Q |
| |
|
|||| |||||| |
|
|
| T |
10588020 |
acccacatctt |
10588010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 255
Target Start/End: Complemental strand, 10651940 - 10651730
Alignment:
| Q |
45 |
ttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactga |
144 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||| || | |||||| ||||||||||||| || |||||||| || || |
|
|
| T |
10651940 |
ttttagagtatggaatgggttctgaaatatccacatatggtgacatgtatagcttcggggtgcttatgttggaaatgcttaccggaagaagaccaacaga |
10651841 |
T |
|
| Q |
145 |
tgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatcttctatcaagagat |
244 |
Q |
| |
|
|| | | |||||||| ||||||||| |||||| ||||||| ||| || |||||| ||||| ||||| | || ||||| || |||||| || ||||| || |
|
|
| T |
10651840 |
tggaatgtttgaagaaggtcaaaatttgcatatgtttgttggaatttcatttcctaataatattatacagattttggatccacatcttgtaccaagaaat |
10651741 |
T |
|
| Q |
245 |
gcagtagaaga |
255 |
Q |
| |
|
| || |||||| |
|
|
| T |
10651740 |
gaagaagaaga |
10651730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 10559370 - 10559500
Alignment:
| Q |
45 |
ttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactga |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| || ||||| |||||||| |||| || |||||||| ||||| |
|
|
| T |
10559370 |
ttttagagtatggaatgggttctgaagtttccacacatggtgacatgtatagctttgggatgcttatattggaaatgattacaggaagaagaccaactga |
10559469 |
T |
|
| Q |
145 |
tgaagtttttgaagatggtcaaaatctgcat |
175 |
Q |
| |
|
|||| | ||| ||||||||||||||||||| |
|
|
| T |
10559470 |
tgaaatgtttttagatggtcaaaatctgcat |
10559500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 19605604 - 19605423
Alignment:
| Q |
45 |
ttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactga |
144 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| || ||||| ||||||||||||| || |||||||| || || |
|
|
| T |
19605604 |
ttttagagtatggaatgagttctgaagtttccacacatggtgatatgtatagctttgggatgcttatattggaaatgcttacgggaagaagaccgacgga |
19605505 |
T |
|
| Q |
145 |
tgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccg |
226 |
Q |
| |
|
||| | ||| ||||||||||||||||| | | ||||| ||| || ||||||||||| |||| || || ||||||||| |
|
|
| T |
19605504 |
tgacatgtttacagatggtcaaaatctgcgtttgtatgttgaaatttcatttcctgataacattatgaagattttggacccg |
19605423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 10659823 - 10659627
Alignment:
| Q |
45 |
ttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactga |
144 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||||||| ||||||||||| || | ||| || ||||||||||||| || |||||||| || || |
|
|
| T |
10659823 |
ttttagagtatggaatgggttctgagatatccacacatggtgacatgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacgga |
10659724 |
T |
|
| Q |
145 |
tgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatcttctatcaaga |
241 |
Q |
| |
|
|||| | |||||||| |||||||||||||||| ||||||| ||| || ||||| ||||| || || | || |||||||| |||||| || ||||| |
|
|
| T |
10659723 |
tgaaatgtttgaagagggtcaaaatctgcatatatttgttgaaatttcatttccaaataatattttacagattttggacccacatcttgtaccaaga |
10659627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 9836069 - 9835940
Alignment:
| Q |
42 |
atgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacccac |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || || || |||||||| ||||||| |||||||| || |
|
|
| T |
9836069 |
atgttttagagtatggaatgggttctgaagcatcaacatatggtgacatgtatagctttgggatgctcgtgttggaaatgattactggaagaagacctac |
9835970 |
T |
|
| Q |
142 |
tgatgaagtttttgaagatggtcaaaatct |
171 |
Q |
| |
|
|||||| ||||| |||||||||||||| |
|
|
| T |
9835969 |
agatgaaagatttgaggatggtcaaaatct |
9835940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 7193481 - 7193658
Alignment:
| Q |
48 |
tagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatga |
147 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||||||||| || || ||| || ||||||| ||||| || || ||||| ||||| |
|
|
| T |
7193481 |
tagaatatggaatgggttctgaagtatctacatatggtgatatgtatagcttcgggatgcttttgttggaaattcttaccggaaggagaccggtagatga |
7193580 |
T |
|
| Q |
148 |
agtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggaccc |
225 |
Q |
| |
|
| | ||||| ||||||||||||| | || ||||||| ||| ||||| ||| ||||||||||| |||| |||||||| |
|
|
| T |
7193581 |
aatgtttgacaatggtcaaaatctacgtatttttgttgaaatttcgttgcctaataatcttatacatattttggaccc |
7193658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 9825523 - 9825604
Alignment:
| Q |
45 |
ttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttac |
126 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
9825523 |
ttttagagtatggaatggattctaaagtttccacttatggtgacatgtatagctttggaattcctatattggaaatgcttac |
9825604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 10216546 - 10216487
Alignment:
| Q |
16 |
gacatcgtattaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtc |
75 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
10216546 |
gacatagtattaatagcttttgttacatattttagagtatggaatgggtgttgaagtgtc |
10216487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 9827665 - 9827571
Alignment:
| Q |
77 |
acatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatgaagtttttgaagatggtcaaaatct |
171 |
Q |
| |
|
||||||||||| |||||||||||||| || || || |||||||| ||||||| |||||||| || |||||| ||||| |||||||||||||| |
|
|
| T |
9827665 |
acatatggtgacatgtatagctttgggatgctcgtgttggaaatgattactggaagaagacctacagatgaaagatttgaggatggtcaaaatct |
9827571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 10582419 - 10582472
Alignment:
| Q |
5 |
attatactagggacatcgtattaatagcttttgctacatgttttagagtatgga |
58 |
Q |
| |
|
||||||| || ||||| ||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
10582419 |
attataccagcgacatagtattaacagcttttcctacatgttttagcgtatgga |
10582472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 10551280 - 10551336
Alignment:
| Q |
49 |
agagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaat |
105 |
Q |
| |
|
||||||||||||||||| ||| ||||| || | ||||| ||||||||||||||||| |
|
|
| T |
10551280 |
agagtatggaatgggttttgaggtgtcaactgaaggtgacatgtatagctttggaat |
10551336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 12900002 - 12900218
Alignment:
| Q |
26 |
taatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgctta |
125 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||| |||||||| ||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12900002 |
taataccttttgttacatattttagagtatgggatgggttcagaagtatccacttgtggtgacatgtatagctttggaatccttatgctggaaatgctta |
12900101 |
T |
|
| Q |
126 |
ctggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggaccc |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
12900102 |
ctggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttggatcc |
12900201 |
T |
|
| Q |
226 |
gcatcttctatcaagag |
242 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
12900202 |
acatcttttaccaagag |
12900218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 12958510 - 12958726
Alignment:
| Q |
26 |
taatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgctta |
125 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| |||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12958510 |
taataccttttgttacatgttttagagtatgggatgggttcagaagtatccacatgtggtgacatgtatagctttggaatccttatgctggaaatgctta |
12958609 |
T |
|
| Q |
126 |
ctggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggaccc |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| || ||||| || |
|
|
| T |
12958610 |
ctggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaaattcatttcctgataatctaataaagatgttggatcc |
12958709 |
T |
|
| Q |
226 |
gcatcttctatcaagag |
242 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
12958710 |
acatcttttaccaagag |
12958726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 12932726 - 12932927
Alignment:
| Q |
41 |
catgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtagaagaccca |
140 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932726 |
catgttttagagtatgggatgggttcagaagtttccacatgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtagaagaccca |
12932825 |
T |
|
| Q |
141 |
ctgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatcttctatcaag |
240 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| || ||||| || |||||| || |||| |
|
|
| T |
12932826 |
ccgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttggatccacatcttttaccaag |
12932925 |
T |
|
| Q |
241 |
ag |
242 |
Q |
| |
|
|| |
|
|
| T |
12932926 |
ag |
12932927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 12907622 - 12907838
Alignment:
| Q |
26 |
taatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgctta |
125 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||| ||||||| ||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12907622 |
taataccttttgttacatattttagagtatggggtgggttcagaagtatccacttgtggtgacatgtatagctttggaatccttatgctggaaatgctta |
12907721 |
T |
|
| Q |
126 |
ctggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggaccc |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
12907722 |
ctggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttggatcc |
12907821 |
T |
|
| Q |
226 |
gcatcttctatcaagag |
242 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
12907822 |
acatcttttaccaagag |
12907838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 12949064 - 12949223
Alignment:
| Q |
25 |
ttaatagcttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgctt |
124 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| |||||||| ||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12949064 |
ttaataccttttgttacatgttttagagtatgggatgggttcggaagtatccacttgtggtgacatgtatagctttggaatccttatgctggaaatgctt |
12949163 |
T |
|
| Q |
125 |
actggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgtt |
184 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12949164 |
actggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgtt |
12949223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 241
Target Start/End: Original strand, 7733 - 7940
Alignment:
| Q |
34 |
tttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtaga |
133 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7733 |
tttgttacatgttttagagtatgggatgggttaagaagtatccacatgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtaga |
7832 |
T |
|
| Q |
134 |
agacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatcttc |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| || ||||| || |||||| |
|
|
| T |
7833 |
agacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttggatccacatcttt |
7932 |
T |
|
| Q |
234 |
tatcaaga |
241 |
Q |
| |
|
|| ||||| |
|
|
| T |
7933 |
taccaaga |
7940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 17923167 - 17922958
Alignment:
| Q |
33 |
ttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggtag |
132 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
17923167 |
ttttgttacatattttagagtatgggatgggttcagaagtatccacttatggtgacatgtatagctttggaatccttatgctggaaatgcttaccggaag |
17923068 |
T |
|
| Q |
133 |
aagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatctt |
232 |
Q |
| |
|
||||||||| |||||| ||||| |||| ||||||||||| |||||||||||| |||| || |||||| ||||||||||| || ||||| || |||||| |
|
|
| T |
17923067 |
aagacccaccgatgaactttttaaagacggtcaaaatctacataactttgttacaatttcatttccttgcaatcttataaagattttggatccacatctt |
17922968 |
T |
|
| Q |
233 |
ctatcaagag |
242 |
Q |
| |
|
|| |||||| |
|
|
| T |
17922967 |
ttaccaagag |
17922958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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