View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_33 (Length: 273)
Name: NF1962_1D_low_33
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 45270424 - 45270695
Alignment:
| Q |
1 |
tctgcgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagt |
100 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45270424 |
tctgcgacaattacgttgtattcattatgatcataattgccttttctcacgatgatggtagagctttggatcaaggtggcagatgttccaaagatgaagt |
45270523 |
T |
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| Q |
101 |
caatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270524 |
caatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcaga |
45270623 |
T |
|
| Q |
201 |
catatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgc |
272 |
Q |
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|||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
45270624 |
catatctcctatgtttctaaatgccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgc |
45270695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 44 - 272
Target Start/End: Original strand, 45293577 - 45293805
Alignment:
| Q |
44 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
143 |
Q |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
45293577 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45293676 |
T |
|
| Q |
144 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagca |
243 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293677 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagca |
45293776 |
T |
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| Q |
244 |
ggaccggctgtgttctcaaatgtcattgc |
272 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
45293777 |
ggaccggctgtgttctcaaatgtcattgc |
45293805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 44 - 272
Target Start/End: Original strand, 45302537 - 45302765
Alignment:
| Q |
44 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
143 |
Q |
| |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
45302537 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45302636 |
T |
|
| Q |
144 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagca |
243 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302637 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagca |
45302736 |
T |
|
| Q |
244 |
ggaccggctgtgttctcaaatgtcattgc |
272 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
45302737 |
ggaccggctgtgttctcaaatgtcattgc |
45302765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 45282236 - 45282465
Alignment:
| Q |
43 |
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgt |
142 |
Q |
| |
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||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || |||| |
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| T |
45282236 |
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgt |
45282335 |
T |
|
| Q |
143 |
tggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagc |
242 |
Q |
| |
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|| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45282336 |
tgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccatc |
45282435 |
T |
|
| Q |
243 |
aggaccggctgtgttctcaaatgtcattgc |
272 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
45282436 |
aggaccggctgtgttctcaaatgtcattgc |
45282465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 43 - 272
Target Start/End: Original strand, 45273992 - 45274222
Alignment:
| Q |
43 |
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggt-accggagataacacagttgcggtagaattgcctg |
141 |
Q |
| |
|
||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| ||| |||| || ||| ||||||||| | |||||| |
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| T |
45273992 |
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggttaccagagacaagacaattgcggtagtactgcctg |
45274091 |
T |
|
| Q |
142 |
ttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccag |
241 |
Q |
| |
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||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45274092 |
ttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacagcttggtgaccat |
45274191 |
T |
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| Q |
242 |
caggaccggctgtgttctcaaatgtcattgc |
272 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
45274192 |
caggaccggctgtgttctcaaatgtcattgc |
45274222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 38587600 - 38587643
Alignment:
| Q |
193 |
aaagcagacatatctccttggtttctaaatgccacagcttggtg |
236 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
38587600 |
aaagcagacatgtctccttggtttctaaatgccactgcttggtg |
38587643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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