View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_35 (Length: 270)
Name: NF1962_1D_low_35
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 76 - 268
Target Start/End: Original strand, 11035017 - 11035209
Alignment:
| Q |
76 |
caagcacacacttttgttacaacctgggatggtattagtagaaccaattagaagaagacatgcaagtcgcgtgggtcttaacgcattgttctcgtttttc |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11035017 |
caagcacacacttttgttacaacctgggatggtattagtagaaccaattagaagaagacatgcaagtcgcgtgggtcttaacgcgttgttctcgtttttc |
11035116 |
T |
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| Q |
176 |
aaaagttcccaagtaaaatttttattcaggaaagtcaacaaatagaaacttgtactgcaagtaattaattaacttaatttgtatacctcattg |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11035117 |
aaaagttcccaagtaaaatttttattcaggaaagtcaacaaatagaaacttgtactgcaagtaattaattaacttaatttgtatacctcattg |
11035209 |
T |
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