View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_low_36 (Length: 265)

Name: NF1962_1D_low_36
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_low_36
NF1962_1D_low_36
[»] chr3 (2 HSPs)
chr3 (23-204)||(202428-202609)
chr3 (23-203)||(206491-206672)
[»] chr4 (3 HSPs)
chr4 (23-204)||(6908378-6908558)
chr4 (23-204)||(44924351-44924532)
chr4 (52-203)||(6901694-6901846)
[»] chr1 (3 HSPs)
chr1 (26-187)||(29514629-29514790)
chr1 (26-110)||(43626332-43626417)
chr1 (114-160)||(43632255-43632301)
[»] chr7 (1 HSPs)
chr7 (23-114)||(24652944-24653035)
[»] chr2 (3 HSPs)
chr2 (200-255)||(14278346-14278401)
chr2 (200-255)||(14300083-14300138)
chr2 (200-255)||(14316557-14316612)
[»] chr8 (1 HSPs)
chr8 (213-255)||(25881661-25881703)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 202428 - 202609
Alignment:
Q  23 ccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatcttt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202428 ccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttgatcttttcttttctaagtattaagttttgctccaatacatttgatgatcttt 202527  T
Q  123 gtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatac 204  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  202528 gtgatgattgaaccttttacttgatgctctgtgtaagagaatattatttagctgtttgatattgcttgttttgatggtatac 202609  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 206672 - 206491
Alignment:
Q  23 ccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacattt-gatgatctt 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  206672 ccctgtttattgtgtgaggaaatctttgcttgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttaaatgatctt 206573  T
Q  122 tgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtata 203  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  206572 tgttataattgaaccttttacttgatggtgtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtata 206491  T

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Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 6908558 - 6908378
Alignment:
Q  23 ccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatcttt 122  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6908558 ccctgtttattgtgtgaggaaatctttgctcaagacatgttgtttttgatcttttcttttctaagtatta-gttttgctccaatacatttgatgatcttt 6908460  T
Q  123 gtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatac 204  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6908459 gtgataattgaactttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatac 6908378  T

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Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 44924532 - 44924351
Alignment:
Q  23 ccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatcttt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44924532 ccctgtttattgtgtgaggaaatctttgctcgagacatgttgttttttatcctttcttttctaagtattaagttttgctccaatacatttgatgatcttt 44924433  T
Q  123 gtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatac 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  44924432 gtgataattgaaccttttacttgatgctgcgtgtaagagaatattatttagctgtttgatattgcttattttgatggtatac 44924351  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 6901694 - 6901846
Alignment:
Q  52 tcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga-tgatctttgtgataattgaaccttttacttgatgct 150  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |    
T  6901694 tcgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttgaattatctttgttataattgaaccttttacctgatggt 6901793  T
Q  151 gtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtata 203  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  6901794 gtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtata 6901846  T

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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 29514629 - 29514790
Alignment:
Q  26 tgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtg 125  Q
    ||||||||||| ||| |||||||||||||||| ||||| ||||| | ||||||||||| ||||||  |||||||||||||||||||||||||||||| ||    
T  29514629 tgtttattgtgcgagtaaatctttgctcgagagatgttctttttgagcttttcttttccaagtatagagttttgctccaatacatttgatgatctttatg 29514728  T
Q  126 ataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgc 187  Q
    ||||||||||||||||||| |||  || |||| ||| |||||||||||| ||||||| ||||    
T  29514729 ataattgaaccttttacttaatggagtttgtatgagtatattatttagcagtttgattttgc 29514790  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 43626332 - 43626417
Alignment:
Q  26 tgtttattgtgtgaggaaatctttgctc-gagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacat 110  Q
    |||||||||||| ||||||||||| ||| ||||| |||||||||| |||| |||||||| || |||||||||||||||||||||||    
T  43626332 tgtttattgtgtaaggaaatcttttctcagagacgtgttgttttttatctcttcttttccaaatattaagttttgctccaatacat 43626417  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 43632255 - 43632301
Alignment:
Q  114 atgatctttgtgataattgaaccttttacttgatgctgtgtgtaaga 160  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  43632255 atgatctttgtgataattgaaccttttacttgatgttgtatgtaaga 43632301  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 24652944 - 24653035
Alignment:
Q  23 ccctgtttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga 114  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  24652944 ccctgtttattgtgtgaggaaatctttgctcaaaacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttga 24653035  T

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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 14278401 - 14278346
Alignment:
Q  200 tatacgggagtgattttcctttgcatttccaccctttttatgatctttttgccaag 255  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14278401 tatacgggagtgattttcctttgcattgccaccctttttatgatctttttgccaag 14278346  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 14300138 - 14300083
Alignment:
Q  200 tatacgggagtgattttcctttgcatttccaccctttttatgatctttttgccaag 255  Q
    |||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  14300138 tatatgggagtgactttcctttgcattgccacgctttttatgatctttttgccaag 14300083  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 14316612 - 14316557
Alignment:
Q  200 tatacgggagtgattttcctttgcatttccaccctttttatgatctttttgccaag 255  Q
    |||| ||||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  14316612 tatatgggagttgttttcctttgcattgccaccctttttatgatctttttgccaag 14316557  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 25881703 - 25881661
Alignment:
Q  213 ttttcctttgcatttccaccctttttatgatctttttgccaag 255  Q
    |||||||||||| | |||||||||||||||||||||| |||||    
T  25881703 ttttcctttgcactgccaccctttttatgatctttttaccaag 25881661  T

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