View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_37 (Length: 264)
Name: NF1962_1D_low_37
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_37 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 24614777 - 24615040
Alignment:
| Q |
1 |
gtttggtgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaag |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614777 |
gtttgttgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaag |
24614876 |
T |
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| Q |
101 |
tcgtgcagtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatatctcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614877 |
tcgtgcagtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatatctcg |
24614976 |
T |
|
| Q |
201 |
atttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctt |
264 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24614977 |
atttaagaaatttgtattaatatgtaacattttattgtctgtcgaaaactaatgttcacatctt |
24615040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 23693342 - 23693599
Alignment:
| Q |
7 |
tgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaagtcgtgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||| | |||||| |
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| T |
23693342 |
tgttggaaggtatcccttttggagcaatgatttgaaaatgtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgc |
23693441 |
T |
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| Q |
107 |
agtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatatctcga--ttt |
204 |
Q |
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| T |
23693442 |
attcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagtttatatcaatgtagggtttcatgtattgctcaagaatttctggaagttt |
23693541 |
T |
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| Q |
205 |
aagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatc |
262 |
Q |
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|| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| |
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| T |
23693542 |
aaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatc |
23693599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 23711782 - 23712039
Alignment:
| Q |
7 |
tgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaagtcgtgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||| | |||||| |
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| T |
23711782 |
tgttggaaggtatcccttttggagcaatgatttgaaaatgtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgc |
23711881 |
T |
|
| Q |
107 |
agtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatatctcga--ttt |
204 |
Q |
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| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||| |
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| T |
23711882 |
attcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagtttatatcaatgtagggtttcatgtattgctcaagaatttctggaagttt |
23711981 |
T |
|
| Q |
205 |
aagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatc |
262 |
Q |
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|| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| |
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| T |
23711982 |
aaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatc |
23712039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 23730238 - 23730495
Alignment:
| Q |
7 |
tgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaagtcgtgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||| | |||||| |
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| T |
23730238 |
tgttggaaggtatcccttttggagcaatgatttgaaaatgtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgc |
23730337 |
T |
|
| Q |
107 |
agtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatatctcga--ttt |
204 |
Q |
| |
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| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||| |
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| T |
23730338 |
attcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagtttatatcaatgtagggtttcatgtattgctcaagaatttctggaagttt |
23730437 |
T |
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| Q |
205 |
aagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatc |
262 |
Q |
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|| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| |
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| T |
23730438 |
aaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatc |
23730495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 23748693 - 23748950
Alignment:
| Q |
7 |
tgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaagtcgtgc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||| | |||||| |
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| T |
23748693 |
tgttggaaggtatcccttttggagcaatgatttgaaaatgtgtacggggtactccgaggataagttattgtcttgtgcccatgttatgatggaatcgtgc |
23748792 |
T |
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| Q |
107 |
agtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatatctcga--ttt |
204 |
Q |
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| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||| |
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| T |
23748793 |
attcaaatttgtggagagggaatcatggaagtttttatgaaattttcaagtttatatcaatgtagggtttcatgtattgctcaagaatttctggaagttt |
23748892 |
T |
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| Q |
205 |
aagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatc |
262 |
Q |
| |
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|| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||||||| |
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| T |
23748893 |
aaaaaatttgtatcaatatgttacatttcattgtccgtcggaaactaatgttcacatc |
23748950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 24116597 - 24116332
Alignment:
| Q |
1 |
gtttggtgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaag |
100 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||| || | ||||||||| || |||||||| || |
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| T |
24116597 |
gtttgttgttgaaaggtatcccttttggagcaatgatttgaagatatgcacagggtactccgaggaaaacttgtggtcttgtgctaatgttatgatgaaa |
24116498 |
T |
|
| Q |
101 |
tcgtgcagtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatatctc- |
199 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24116497 |
tcgtgcattcaaatttgtggagatggacacatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaatttctca |
24116398 |
T |
|
| Q |
200 |
-gatttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaactaatgttcacatctt |
264 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||||| |||||||| | |||||||||||| |
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| T |
24116397 |
aaatttaagaaatttgtatcaatatgtgacatttcattgtctatcgaaaaccattgttcacatctt |
24116332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 24108890 - 24108621
Alignment:
| Q |
1 |
gtttggtgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaag |
100 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||| | |
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| T |
24108890 |
gtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtacagggtactctgaggacaagttattgtcttgtgccagtgttatgatggat |
24108791 |
T |
|
| Q |
101 |
tcgtgcagtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttat---atcaatctagggtttcatgtattgctcaagaatatc |
197 |
Q |
| |
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||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
24108790 |
tcgtgcattcaaatttgtagagatggatacatggaagtttttaagaaattttcaagtttatatcatcaatctagggtttcatgtattgctcaagaatttc |
24108691 |
T |
|
| Q |
198 |
tcga--tttaagaaatttgtaataatatgtgacattttattgtctgtcgaaaacta-atgttcacatctt |
264 |
Q |
| |
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|||| ||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
24108690 |
tcgaagtttaagaaattcgtatcaatatgtgacatttcattgtctgtcgaaaactatatgttcacatctt |
24108621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 23689878 - 23690071
Alignment:
| Q |
1 |
gtttggtgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaag |
100 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||||| || |
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| T |
23689878 |
gtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtacagggtactctgaggaaaacttgttgtcttgtgcacacgttatgatgaaa |
23689977 |
T |
|
| Q |
101 |
tcgtgcagtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaat |
194 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
23689978 |
tcgtgcattcaaatttgtggagagggaatcatggaagtctttaagaaattttcaagtttatatcaatgtagggtttcatgtgttgctcaagaat |
23690071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 24062115 - 24062308
Alignment:
| Q |
1 |
gtttggtgttggaaggtatcccttttggagcaatgatttgaagatgtgtacggggtactccgaggaaaagttattgtcttgtgccaacgttatgatcaag |
100 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||||| || |
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| T |
24062115 |
gtttgttgttgaaaggtatcccttttggagcaatgatttgaagatgtgtacagggtactctgaggaaaacttgttgtcttgtgcacacgttatgatgaaa |
24062214 |
T |
|
| Q |
101 |
tcgtgcagtcaaatttgtggagatggaatcatggaagtttttaagaaattttcaagtttatatcaatctagggtttcatgtattgctcaagaat |
194 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
24062215 |
tcgtgcattcaaatttgtggagagggaatcatggaagtctttaagaaattttcaagtttatatcaatgtagggtttcatgtgttgctcaagaat |
24062308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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