View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_39 (Length: 262)
Name: NF1962_1D_low_39
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_39 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2730 - 2985
Alignment:
| Q |
1 |
gacaattgttcggtctgtaataggcaaatgagtcaaaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaacattt |
100 |
Q |
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| T |
2730 |
gacaattggtcggtctgtaataggcaaatgggtcaaaaacaaaacgtcttccaatgtgacgttcatgttttgactacagacccgaaaataagaaacattt |
2829 |
T |
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| Q |
101 |
tccatagagttataaaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttaggagtctcaacaaagaactac |
200 |
Q |
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| T |
2830 |
tctatagagttataaaatgacatgaacattctcaacaaagatgttgtcatttccaccggttgattggggataagccttaggagtctcaacaaagaactac |
2929 |
T |
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| Q |
201 |
cgtcatcattattttcaattctatcgttgattttggttttaagcagttcatctaat |
256 |
Q |
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| T |
2930 |
tctcatcattattttcaattctatcgttgattttgattttaagcggtccatctaat |
2985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 24679382 - 24679141
Alignment:
| Q |
15 |
ctgtaataggcaaatgagtcaaaaacaaaacgtcctccaatgtgacgttcatgttttgaacacaaactcgaaaataagaaacattttccatagagttata |
114 |
Q |
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| T |
24679382 |
ctgtagtaggcaaatgtgtcaaaaacaaaacatcctccaatgcgacgttcatgttttgaccactgactcgaaaataagaaacattttctatatagttata |
24679283 |
T |
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| Q |
115 |
aaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccgtcatcattattt |
214 |
Q |
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| T |
24679282 |
aaattacatgaacattcttaataaagatgttggtatttccaccggttgattggggataagccttaggagtctcaacaaagaactaccctcatcattattt |
24679183 |
T |
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| Q |
215 |
tcaattctatcgttgattttggttttaagcagttcatctaat |
256 |
Q |
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| T |
24679182 |
tcaattctatcgttgattttggttttaaacggttcatctaat |
24679141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 25341313 - 25341487
Alignment:
| Q |
83 |
cgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttagga |
182 |
Q |
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| T |
25341313 |
cgaaaataagaaacattttcatcaatgttataatatgacatgaaagttttcaacaaagatgtttgcaattccactggtttattgggcataagccttagga |
25341412 |
T |
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| Q |
183 |
gtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttggttttaagcagttcatctaatt |
257 |
Q |
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| T |
25341413 |
gtctcaacaaagaactacccttatcattattataaattatatcgttgattttggttttaagcggttcatctaatt |
25341487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 25345796 - 25345970
Alignment:
| Q |
83 |
cgaaaataagaaacattttccatagagttataaaatgacatgaacattctcaacaaagatgttggcatttccaccggttgattggggataagccttagga |
182 |
Q |
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|||||||||||||||||||| | ||||||| |||||||||| || |||||||||||||| ||| |||||| |||| |||||| ||||||||||||| |
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| T |
25345796 |
cgaaaataagaaacattttcatcaatgttataatatgacatgaaagttttcaacaaagatgtttgcaattccactggtttattgggcataagccttagga |
25345895 |
T |
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| Q |
183 |
gtctcaacaaagaactaccgtcatcattattttcaattctatcgttgattttggttttaagcagttcatctaatt |
257 |
Q |
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||||||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||| |||||||||||| |
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| T |
25345896 |
gtctcaacaaagaactacccttatcattattataaattatatcgttgattttggttttaagcggttcatctaatt |
25345970 |
T |
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