View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_4 (Length: 759)
Name: NF1962_1D_low_4
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 653; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 16 - 716
Target Start/End: Complemental strand, 13855755 - 13855055
Alignment:
| Q |
16 |
acatcaatagcataactttctgttttggttctaaattttggatctagcttatagttaagtaacaatgaagtacgaacactcctcgggttacgtgtgtcgg |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13855755 |
acatcaatggcataactttctgttttggttctaaattttggatctagcttatagttaagtaactatgaagtacgaacactcctcgggttaggtgtgtcgg |
13855656 |
T |
|
| Q |
116 |
acatcgacacatataattacattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggtaacgggtgtctatatccgttcttcat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13855655 |
acatcgacacatataattacattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttagtaacgggtgtctatatccgttcttcat |
13855556 |
T |
|
| Q |
216 |
aggtatacttaaaattatcctcgataactacgtgtcagtgtccttatcgtgtcatgtcagtaattcatacatcaacattatcaaaacaaaacacagacac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855555 |
aggtatacttaaaattatcctcgataactacgtgtcagtgtccctatcgtgtcatgtcagtaattcatacatcaacattatcaaaacaaaacacagacac |
13855456 |
T |
|
| Q |
316 |
ataccgatttaacctttccaaacttctccccatcctccaaaaactccttcatcacctccgttctcggatgatgcatccacatagtcccatccataaactg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855455 |
ataccgatttaacctttccaaacttctccccatcctccaaaaactccttcatcacctccgttctcggatgatgcatccacatagtcccatccataaactg |
13855356 |
T |
|
| Q |
416 |
caccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgccaccggtttctcaagcaacacatgcttccccttctttgcagca |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13855355 |
caccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgccaccggtttctcaagcaacacatgcttccccttcttcgcagca |
13855256 |
T |
|
| Q |
516 |
gccaccgcccatttcacatgcaacgtcgtcagtaatggcaagtaaacagcgtcaacattagggtcgtcaagaacttcttcgtatgagccgtagattttgg |
615 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
13855255 |
gccaccgcccatttcacatgtaacgtcgtcggtaacggcaagtaaacagcgtcaacattagggtcgtcaagaacttcttcgtaagagccgtagactttgg |
13855156 |
T |
|
| Q |
616 |
cggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacggcggagattgtggcggtggaagagaggagaatggt |
715 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855155 |
cggtgggacggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacggcggagattgtggcggtggaagagaggagaatggt |
13855056 |
T |
|
| Q |
716 |
g |
716 |
Q |
| |
|
| |
|
|
| T |
13855055 |
g |
13855055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 276 - 714
Target Start/End: Complemental strand, 13849706 - 13849267
Alignment:
| Q |
276 |
taattcatacatcaacattatcaaaac-aaaacacagacacataccgatttaacctttccaaacttctccccatcctccaaaaactccttcatcacctcc |
374 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
13849706 |
taattcatacatcaacattatcaaaaccaaaacacaaacacataccgatttaaccttgccaaacttctctccatcctccaaaaaccccttcatcacctct |
13849607 |
T |
|
| Q |
375 |
gttctcggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactaaccgcca |
474 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
13849606 |
gttctaggatgatgcatccacatagtcccatccataaactgcaccccacactcctcacacaccttcacaatctcatcaaactccttcacactcacagcca |
13849507 |
T |
|
| Q |
475 |
ccggtttctcaagcaacacatgcttccccttctttgcagcagccaccgcccatttcacatgcaacgtcgtcagtaatggcaagtaaacagcgtcaacatt |
574 |
Q |
| |
|
|||| ||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || |||| |||||||||||||||||| |
|
|
| T |
13849506 |
ccggcttctctaacaaaacatgcttccccttcttcgcagcagccaccgcccatttcacatgcaacgtagtcggcaacggcacgtaaacagcgtcaacatt |
13849407 |
T |
|
| Q |
575 |
agggtcgtcaagaacttcttcgtatgagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctg |
674 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13849406 |
agggtcatcaagaacttcttcataggagccgtagattttggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctg |
13849307 |
T |
|
| Q |
675 |
ccgacggcggagattgtggcggtggaagagaggagaatgg |
714 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
13849306 |
ccgacggcagagatggtggcggtggaagagaggagaatgg |
13849267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 13851893 - 13851773
Alignment:
| Q |
16 |
acatcaatagcataactttctgttttggttctaaattttggatctagcttatagttaagtaacaatgaagtacgaacactcctcgggttacgtgtgtcgg |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | ||| ||||| ||||| | ||||| | |
|
|
| T |
13851893 |
acatcaaaggcataactttctgttttggttcttaattttggatctagcttatagttaagtaactatgaagcatagacattcctcaggttaggcgtgtcag |
13851794 |
T |
|
| Q |
116 |
acatcgacacatataattaca |
136 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13851793 |
acatcgacacatataattaca |
13851773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 33303684 - 33303630
Alignment:
| Q |
135 |
cattttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt |
189 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| ||| | |||||| |||| |
|
|
| T |
33303684 |
cattttttcaaattattattagtgtcgatgtgtcagtgtccgtatcgtgtctggt |
33303630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 34298460 - 34298407
Alignment:
| Q |
136 |
attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt |
189 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |||||||| |||| |
|
|
| T |
34298460 |
attttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtctggt |
34298407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 34897178 - 34897122
Alignment:
| Q |
80 |
atgaagtacgaacactcctcgggttacgtgtgtcggacatcgacacatataattaca |
136 |
Q |
| |
|
|||||| ||| |||||||||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
34897178 |
atgaagcacggacactcctcgaattacatgtgtccgacatcgacacatataattaca |
34897122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 38143309 - 38143258
Alignment:
| Q |
87 |
acgaacactcctcgggttacgtgtgtcggacatcgacacatataattacatt |
138 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||| | ||||||||||||||||| |
|
|
| T |
38143309 |
acgaacactcctcggattaggtgtgtctgacaccaacacatataattacatt |
38143258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 927871 - 927909
Alignment:
| Q |
135 |
cattttctcaaattattagtagtgtcgatgtgtcagttt |
173 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
927871 |
cattttctcaaattattattagtgtcgacgtgtcagttt |
927909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 22423847 - 22423896
Alignment:
| Q |
136 |
attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtt |
185 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
22423847 |
attttctcaaattattagtagtgtcagggtgtcagtatccgtgtcgtgtt |
22423896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 43061708 - 43061745
Alignment:
| Q |
136 |
attttctcaaattattagtagtgtcgatgtgtcagttt |
173 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
43061708 |
attttctcaaattattactagtgtcgatgtttcagttt |
43061745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 12674536 - 12674589
Alignment:
| Q |
136 |
attttctcaaattattagtagtgtcgatgtgtcagtttccatgtcgtgtttggt |
189 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| | ||| |||||||| |||| |
|
|
| T |
12674536 |
attttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtctggt |
12674589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University