View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_low_40 (Length: 261)

Name: NF1962_1D_low_40
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_low_40
NF1962_1D_low_40
[»] chr7 (9 HSPs)
chr7 (2-261)||(24385227-24385486)
chr7 (144-261)||(24391615-24391732)
chr7 (6-61)||(660832-660887)
chr7 (2-61)||(14076704-14076763)
chr7 (2-61)||(14386732-14386791)
chr7 (2-61)||(24391440-24391499)
chr7 (2-61)||(6864792-6864851)
chr7 (6-60)||(20058043-20058097)
chr7 (2-58)||(29859480-29859536)
[»] chr6 (2 HSPs)
chr6 (2-61)||(17369690-17369749)
chr6 (2-61)||(20770676-20770735)
[»] chr4 (6 HSPs)
chr4 (2-61)||(11970967-11971026)
chr4 (2-60)||(11981669-11981727)
chr4 (2-58)||(3560946-3561002)
chr4 (2-57)||(3557752-3557807)
chr4 (2-57)||(3565770-3565825)
chr4 (2-55)||(53774866-53774919)
[»] chr3 (1 HSPs)
chr3 (2-58)||(3625760-3625816)
[»] chr5 (2 HSPs)
chr5 (2-61)||(18964815-18964874)
chr5 (2-60)||(28763891-28763949)
[»] chr1 (1 HSPs)
chr1 (2-58)||(39379049-39379105)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 24385227 - 24385486
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaatatttaaaacttcatatatatccttgttgccattgttttatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24385227 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaatatttaaaacttcatatatatcgttgttgccattgttttatt 24385326  T
Q  102 ctgagaatggtgatgcattgatattggaaatccctgtattacgacaactaattctctataattggaggactaataaggtggagcgagttataactactac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24385327 ctgagaatggtgatgcattgatattggaaatccctgtattacgacaactaattctctataattggaggactaataaggtggagcgagttataactagtac 24385426  T
Q  202 caaaagaaaaaggtgggtttttctgaataattatattgaaagttcggtttcgacgaatgg 261  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24385427 caaaagaaaaaggtgggtttttctgaataattatattgaaagtttggtttcgacgaatgg 24385486  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 24391615 - 24391732
Alignment:
Q  144 gacaactaattctctataattggaggactaataaggtggagcgagttataactactaccaaaagaaaaaggtgggtttttctgaataattatattgaaag 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  24391615 gacaactaattctctacaattggaggactaataaggtggagcgaattatgactactaccaaaagaaaaaggtgggtttttcgcaataattatgttgaaag 24391714  T
Q  244 ttcggtttcgacgaatgg 261  Q
    || |||||||||||||||    
T  24391715 tttggtttcgacgaatgg 24391732  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 660887 - 660832
Alignment:
Q  6 gagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||| ||||||||| || ||| |||||||||||| |||||||||||||||||    
T  660887 gagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaata 660832  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 14076704 - 14076763
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||||||| | ||||||| || |||||||||||||||| |||| ||||||||||||    
T  14076704 tttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaata 14076763  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 14386732 - 14386791
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||||||| | ||||||| || |||||||||||||||| |||| ||||||||||||    
T  14386732 tttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaata 14386791  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 24391440 - 24391499
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||||||||| | |||||||| ||||||||| |||||| || ||||||||||||||    
T  24391440 tttggagttgaaaaatgttggagtcaatttcttaacattagtaatgataatcttcaaata 24391499  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 6864851 - 6864792
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||||||| ||||||||| ||  || ||||||| |||| |||||||||||||||||    
T  6864851 tttggagttgaagagtcttggactcagttccttaaaactagttatcataatcttcaaata 6864792  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 20058097 - 20058043
Alignment:
Q  6 gagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaat 60  Q
    |||||||| |||||||| ||| |||||||||||||||| || | |||||||||||    
T  20058097 gagttgaagagtcttggtgtcaatttcttaaaattagttatgaaaatcttcaaat 20058043  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 29859480 - 29859536
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaa 58  Q
    |||||||||||| | |||||||  | |||||||||||||||| |||| |||||||||    
T  29859480 tttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 17369690 - 17369749
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||||||| | ||||||| || |||||||||||||||| |||| ||||||||||||    
T  17369690 tttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaata 17369749  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 20770676 - 20770735
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||| ||||| |||| |||| || ||| |||||||||||| |||||||||||||||||    
T  20770676 tttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaata 20770735  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 11971026 - 11970967
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||| ||| ||||||||| || |||||||| ||||||| |||||||||||||||||    
T  11971026 tttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaata 11970967  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 11981727 - 11981669
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaat 60  Q
    |||||||| ||| |||| |||| ||||||||||||||||||| ||| ||||||||||||    
T  11981727 tttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaaat 11981669  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 3561002 - 3560946
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaa 58  Q
    ||||| |||||| ||||||||| || |||||||||||||||| ||||| ||||||||    
T  3561002 tttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttcaa 3560946  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 3557752 - 3557807
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttca 57  Q
    ||||| |||||| ||||||||| || |||||||||||||||| ||||| |||||||    
T  3557752 tttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3557807  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 3565770 - 3565825
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttca 57  Q
    ||||| |||||| ||||||||| || |||||||||||||||| ||||| |||||||    
T  3565770 tttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 53774866 - 53774919
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatctt 55  Q
    |||||||||||| ||||||||| || ||| |||||||||||| |||| ||||||    
T  53774866 tttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3625760 - 3625816
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaa 58  Q
    ||||| |||||| ||||||||| || |||||||||||||||| |||| |||||||||    
T  3625760 tttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttcaa 3625816  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 18964874 - 18964815
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaata 61  Q
    |||||||||||| | ||||||| || ||||||||||||| || |||| ||||||||||||    
T  18964874 tttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaaata 18964815  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 28763949 - 28763891
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaaat 60  Q
    ||||||||||||||||||||||||||||| || ||||| ||  ||||  ||||||||||    
T  28763949 tttggagttgaaaagtcttggagtcgattcctcaaaatcagctatcaggatcttcaaat 28763891  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 39379105 - 39379049
Alignment:
Q  2 tttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaa 58  Q
    ||||| |||||| ||||||||| || |||||||||||| ||| ||||| ||||||||    
T  39379105 tttggggttgaagagtcttggactcaatttcttaaaatcagttatcatgatcttcaa 39379049  T

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