View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_44 (Length: 255)
Name: NF1962_1D_low_44
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 14768808 - 14768574
Alignment:
| Q |
20 |
aattctttcagatgccctgaaaacaaaggagaagatagatagcattgggttgggagcaaataagttggagacaagacttagagggaaaaaggtattcatt |
119 |
Q |
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| T |
14768808 |
aattctttcagatgccctgaaaacaaaggagaagatagatagtattgggttgggagcaaataagttggagacaagacttagagggaaaaaggtattcatt |
14768709 |
T |
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| Q |
120 |
gtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaaccagagatg |
219 |
Q |
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| T |
14768708 |
gtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggcaatcgtgcatggtttggtactggaagtgtaataattgttacaaccagagatg |
14768609 |
T |
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| Q |
220 |
tacaccttcttaatttacttgaagatgtccatctc |
254 |
Q |
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| T |
14768608 |
tacaccttcttaatttacttgaagttgaccatctc |
14768574 |
T |
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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 32412722 - 32412641
Alignment:
| Q |
151 |
taaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaaccagagatgtacaccttcttaa |
232 |
Q |
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| T |
32412722 |
taaaagccctatgtggaaatcgtaaatggtttggtacgggaagtgtattaattgttacaaccagagatgtacacctacttaa |
32412641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 236
Target Start/End: Complemental strand, 3288263 - 3288129
Alignment:
| Q |
102 |
gggaaaaaggtattcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataa |
201 |
Q |
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| T |
3288263 |
gggaaaaatgtattcgttgtacttgatgatgtgaccacatttgaacagttaaaagccctatgtgcaaatcctgaattctttggtccaggaagtgtattaa |
3288164 |
T |
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| Q |
202 |
ttgttacaaccagagatgtacaccttcttaattta |
236 |
Q |
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| T |
3288163 |
ttattacaactagagatgtacacctacttgattta |
3288129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 3409109 - 3409006
Alignment:
| Q |
121 |
tacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaaccagagatgt |
220 |
Q |
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| T |
3409109 |
tacttgatgatgtgactgattttcagcaaataaaagccctatgcggaaatcataaattttttggtgctggaagtgtgttaattgttacaaccagagatgt |
3409010 |
T |
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| Q |
221 |
acac |
224 |
Q |
| |
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|||| |
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| T |
3409009 |
acac |
3409006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 8373615 - 8373419
Alignment:
| Q |
22 |
ttctttcagatgccctgaaaacaaaggagaagatagatagcattgggttgggagcaaataagttggagacaagacttagaggga-aaaaggtattcattg |
120 |
Q |
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||||||||||| ||| |||||||| || |||||| ||||||||| |||| ||||||| | |||| ||||||| ||||| ||||||| || || | |
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| T |
8373615 |
ttctttcagatctcctaaaaacaaaagataagatacatagcattgcagtggggataaataagatcgagaaaagacttc-agggacaaaaggttttaatcg |
8373517 |
T |
|
| Q |
121 |
tacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaaccagagat |
218 |
Q |
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| T |
8373516 |
tacttgatgatgtgaccaagtctgagcaattaaaagctctgggtggaaatcctaagttgtttggttcaggaagtgtattgattattacaactagagat |
8373419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 31060628 - 31060513
Alignment:
| Q |
114 |
ttcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggaaatcgtgcatggtttggtactggaagtgtaataattgttacaacca |
213 |
Q |
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||||| |||||||||||||||||| |||| | |||||||||||||||||| |||| || | |||||| | ||| |||| | ||| ||||||||| |
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| T |
31060628 |
ttcatcgtacttgatgatgtgaccaagtttgggaaattaaaagccctgtgtgtaaattgtaagttctttggttcgcgaactgtattgatttttacaacca |
31060529 |
T |
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| Q |
214 |
gagatgtacaccttct |
229 |
Q |
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|||||| ||||||||| |
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| T |
31060528 |
gagatgaacaccttct |
31060513 |
T |
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