View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_45 (Length: 255)
Name: NF1962_1D_low_45
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 42130192 - 42130011
Alignment:
| Q |
19 |
gttttgctttcccttggccgtatactctcatttttgtactactttgtttctctttttacttcatatatattaccaaaataaacttgtttaaataattcag |
118 |
Q |
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| T |
42130192 |
gttttgctttcccttggccatatactctcatttttgtactactttgtttctctttttacttcatatatattaccaaaataaacttgtttaaataattcag |
42130093 |
T |
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| Q |
119 |
tcagctcttataaaagctttaannnnnnnnacataaataatattttttacaaactttaatttattctgataaaagcctcaag |
200 |
Q |
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| T |
42130092 |
tcagctcttataaaagctttaattttttttacataaataatattttttacaaactttaatttattctgataaaagcctcaag |
42130011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 42129948 - 42130005
Alignment:
| Q |
195 |
ctcaaggaaaacaaatacattaaccatgtacaggatgtaattagagggtagtcaattt |
252 |
Q |
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| T |
42129948 |
ctcaaggaaaacaaatacattaaccatgtacaggatgtaattagagggtagtcaattt |
42130005 |
T |
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