View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_46 (Length: 250)
Name: NF1962_1D_low_46
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 26412582 - 26412351
Alignment:
| Q |
17 |
catcaaaaccatactttgcagtagacgaacaggtgggttttctaatatgtctggaattatagcgaacagaaaagtgaaaactgcaagaagtaacaaaatt |
116 |
Q |
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| T |
26412582 |
catcaaaaccatactttgcagtagacgaacaggtgggttttctaatatgtctggaattatagcgaacagaaaagtgaaaactgcaagaagtaacaaaatt |
26412483 |
T |
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| Q |
117 |
ctcgtaggaaagagatgtttctccacggatgtcatcaccaaaatctgttatttccacaacaacaaaaacaatgagtacataaaagagcttaaatatcatg |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26412482 |
ctcgtaggaaagagatgtttctccacggatgttatcaccaaaacctgttatttccacaacaacaaaaacaatgagtacataaaagagcttaaatatcatg |
26412383 |
T |
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| Q |
217 |
tcagtgatatacttaaaacttgtacgatcact |
248 |
Q |
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|||||||||||||| |||||||| |||||||| |
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| T |
26412382 |
tcagtgatatacttgaaacttgttcgatcact |
26412351 |
T |
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