View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_47 (Length: 248)
Name: NF1962_1D_low_47
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_47 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 10256049 - 10255818
Alignment:
| Q |
17 |
acatcactcactaaataaccatcatcctcttcatcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacc |
116 |
Q |
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| T |
10256049 |
acataactcactaaataaccatcatcctcttcttcaccatcctccctcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacacc |
10255950 |
T |
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| Q |
117 |
caacttcctcccctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccat |
216 |
Q |
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| T |
10255949 |
caacttcctcccctttcaacacatctatcttcaccaccccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccat |
10255850 |
T |
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| Q |
217 |
ataatcaccatttatcaccgcgaaatccaggt |
248 |
Q |
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| T |
10255849 |
ataatcaccatttatcaccgcgaaatccaggt |
10255818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 10238559 - 10238757
Alignment:
| Q |
17 |
acatcactcactaaataaccatcatcctcttcatcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacc |
116 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10238559 |
acataactcactaaataaccatcatcctcttcctcaccatcttccctagccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacc |
10238658 |
T |
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| Q |
117 |
caacttcctcccctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttcccca |
215 |
Q |
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| T |
10238659 |
caacttcctcccctttcaacacatctatcttcaccacccccgaaaacttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttcccca |
10238757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 10229779 - 10229977
Alignment:
| Q |
17 |
acatcactcactaaataaccatcatcctcttcatcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacc |
116 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
10229779 |
acataactcactaaataaccatcatcctcttcctcaccaccttccatcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacatc |
10229878 |
T |
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| Q |
117 |
caacttcctcccctttcaacacatctatcttcaccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttcccca |
215 |
Q |
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| T |
10229879 |
caacttcctcccctttcaacacatcaatcttcaccacccccgaaaactttggcattggattcccaatcgctgcataaacaaacctactcttcttcccca |
10229977 |
T |
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