View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_50 (Length: 241)
Name: NF1962_1D_low_50
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5809472 - 5809703
Alignment:
| Q |
1 |
ttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809472 |
ttgcaagttcattttcggtggcaccataaggcaagttctacgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctc |
5809571 |
T |
|
| Q |
101 |
caaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaaggtcatcagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5809572 |
caaagcttccacattcactccagcttttttaaatgcgtt-tttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaagatcatcagct |
5809670 |
T |
|
| Q |
201 |
tctcgattcagtaaatcacttttactaacacca |
233 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
5809671 |
tctcgatccagtaaatcacttttactaacacca |
5809703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 38605799 - 38605568
Alignment:
| Q |
2 |
tgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctcc |
101 |
Q |
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||||||||||||||| || |||||||| ||||| || || ||||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||||||| |
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| T |
38605799 |
tgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttaacgccataaactttaccctccgcaagctcctcc |
38605700 |
T |
|
| Q |
102 |
aaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaaggtcatcagctt |
201 |
Q |
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|||| ||||||||||||||||| ||||||||||| || ||||||||| ||||||| | |||||||||||||||| | | |||||| |||||||||| |
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| T |
38605699 |
aaagactccacattcactccagcctttttaaatgcattttttgtttctaaaatcacatcagtttctcccagagcaacatttgcagcaacatcatcagctt |
38605600 |
T |
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| Q |
202 |
ctcgattcagtaaatcacttttactaacacca |
233 |
Q |
| |
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|| || || |||||||||||||||||||||| |
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| T |
38605599 |
ctggacccaataaatcacttttactaacacca |
38605568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37754903 - 37755135
Alignment:
| Q |
1 |
ttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctc |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| || || ||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
37754903 |
ttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttacaattcacaagctcctc |
37755002 |
T |
|
| Q |
101 |
caaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaaggtcatcagct |
200 |
Q |
| |
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|| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |||| | |||||| | |||| |||||| ||||||||| |
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| T |
37755003 |
cagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttgagtttgtgccagagaatgacgtgaagcaagatcatcagct |
37755102 |
T |
|
| Q |
201 |
tctcgattcagtaaatcacttttactaacacca |
233 |
Q |
| |
|
||| ||| || ||||||||||||||||||||| |
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|
| T |
37755103 |
tctggatcaagaaaatcacttttactaacacca |
37755135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37760877 - 37761109
Alignment:
| Q |
1 |
ttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctc |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| || || ||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
37760877 |
ttgcaagttcattttccgtagcaccatatggcaaattttttgctaaaagtacatggttacttcttttcacgccatcaactttacaattcacaagctcctc |
37760976 |
T |
|
| Q |
101 |
caaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaatacgtacagcaaggtcatcagct |
200 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||| || |||||||| |||||||||| |||| | |||||| | |||| |||||| ||||||||| |
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| T |
37760977 |
cagagactccacattcactccagcttttttaaatgcattttttgtttcaaaaatcacttgagtttgtgccagagaatgacgtgaagcaagatcatcagct |
37761076 |
T |
|
| Q |
201 |
tctcgattcagtaaatcacttttactaacacca |
233 |
Q |
| |
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||| ||| || ||||||||||||||||||||| |
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| T |
37761077 |
tctggatcaagaaaatcacttttactaacacca |
37761109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37739051 - 37739283
Alignment:
| Q |
1 |
ttgcaagttcattttcggtggcaccataaggcaagttcttcgctaaaattacatggttacttcttttcaagccatcaactttacccttcgcaagctcctc |
100 |
Q |
| |
|
||||||| |||||||| || |||||||| ||||| || |||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
37739051 |
ttgcaagatcattttccgtagcaccatatggcaaatttttcgctaaaagtacatggttacttcttttcctgccatcaactttacccttcgcatgctcctc |
37739150 |
T |
|
| Q |
101 |
caaagcttccacattcactccagcttttttaaatgcgttctttgtttctgaaatcacttgtgtttctcccagagcaata-cgtacagcaaggtcatcagc |
199 |
Q |
| |
|
|| || ||||| ||||||||||||||| ||||||| || ||||||||| |||| | | |||||| |||||| |||| ||| |||||| ||||||| |
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| T |
37739151 |
cagagactccacgttcactccagcttttctaaatgcattttttgtttctttaatcccgtcagtttctgccagag-aataccgtgaagcaagaccatcagc |
37739249 |
T |
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| Q |
200 |
ttctcgattcagtaaatcacttttactaacacca |
233 |
Q |
| |
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|||| ||| ||| ||||||||||||||||||||| |
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| T |
37739250 |
ttctggatccagaaaatcacttttactaacacca |
37739283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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