View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_low_51 (Length: 241)

Name: NF1962_1D_low_51
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_1D_low_51
NF1962_1D_low_51
[»] chr2 (20 HSPs)
chr2 (100-218)||(14770041-14770160)
chr2 (7-100)||(14769608-14769701)
chr2 (100-151)||(2610274-2610325)
chr2 (11-100)||(16292026-16292116)
chr2 (104-148)||(45368112-45368156)
chr2 (101-154)||(17581215-17581268)
chr2 (104-148)||(452110-452154)
chr2 (104-148)||(4807342-4807386)
chr2 (104-148)||(11992594-11992638)
chr2 (100-148)||(38453108-38453156)
chr2 (104-148)||(41197716-41197760)
chr2 (11-100)||(2609841-2609931)
chr2 (104-154)||(3865822-3865872)
chr2 (11-100)||(24584485-24584575)
chr2 (11-100)||(38453497-38453587)
chr2 (104-135)||(8180530-8180561)
chr2 (11-100)||(45368504-45368594)
chr2 (12-100)||(452495-452584)
chr2 (104-148)||(3244139-3244183)
chr2 (100-132)||(24584110-24584142)
[»] chr4 (20 HSPs)
chr4 (100-148)||(33226955-33227003)
chr4 (11-100)||(53703923-53704013)
chr4 (104-148)||(1777503-1777547)
chr4 (104-148)||(23906789-23906833)
chr4 (100-148)||(46583312-46583360)
chr4 (7-100)||(1777894-1777989)
chr4 (100-135)||(31960315-31960350)
chr4 (11-100)||(23907181-23907271)
chr4 (104-148)||(435979-436023)
chr4 (104-148)||(27450661-27450705)
chr4 (104-148)||(43433668-43433712)
chr4 (104-148)||(48174581-48174625)
chr4 (104-148)||(48623015-48623059)
chr4 (104-148)||(53707544-53707588)
chr4 (104-148)||(56375040-56375084)
chr4 (7-97)||(55769265-55769355)
chr4 (7-97)||(55833521-55833611)
chr4 (11-100)||(435545-435635)
chr4 (104-137)||(50286721-50286754)
chr4 (104-136)||(35690055-35690087)
[»] chr5 (19 HSPs)
chr5 (11-100)||(24177837-24177927)
chr5 (100-148)||(20318737-20318785)
chr5 (11-100)||(1288468-1288558)
chr5 (11-100)||(12493241-12493331)
chr5 (104-148)||(1275015-1275059)
chr5 (104-148)||(10639047-10639091)
chr5 (104-148)||(12492875-12492919)
chr5 (11-100)||(1274578-1274668)
chr5 (11-100)||(20318304-20318394)
chr5 (100-154)||(36200528-36200582)
chr5 (104-148)||(3394460-3394504)
chr5 (100-148)||(24178270-24178318)
chr5 (104-148)||(28977345-28977389)
chr5 (9-56)||(3301160-3301207)
chr5 (100-154)||(3096922-3096976)
chr5 (100-154)||(20077299-20077353)
chr5 (104-148)||(2075962-2076006)
chr5 (104-148)||(3301599-3301643)
chr5 (104-148)||(34272772-34272816)
[»] scaffold0018 (2 HSPs)
scaffold0018 (11-102)||(30781-30873)
scaffold0018 (104-148)||(31218-31262)
[»] chr3 (10 HSPs)
chr3 (104-148)||(25191129-25191173)
chr3 (100-148)||(47542199-47542247)
chr3 (104-151)||(30345277-30345324)
chr3 (104-148)||(28245187-28245231)
chr3 (104-148)||(38849844-38849888)
chr3 (11-100)||(51448588-51448678)
chr3 (107-145)||(52138553-52138591)
chr3 (104-148)||(51448197-51448241)
chr3 (11-100)||(52138141-52138231)
chr3 (11-56)||(9258199-9258244)
[»] chr1 (17 HSPs)
chr1 (100-148)||(43240869-43240917)
chr1 (104-148)||(22089844-22089888)
chr1 (104-148)||(49347881-49347925)
chr1 (100-148)||(51441252-51441300)
chr1 (104-151)||(32083230-32083277)
chr1 (11-100)||(43241260-43241350)
chr1 (11-99)||(49348274-49348363)
chr1 (104-148)||(1210495-1210539)
chr1 (104-148)||(8671670-8671714)
chr1 (104-148)||(9592484-9592528)
chr1 (104-148)||(30202618-30202662)
chr1 (104-148)||(51601808-51601852)
chr1 (109-148)||(8391525-8391564)
chr1 (104-154)||(19936272-19936322)
chr1 (100-154)||(51234360-51234414)
chr1 (11-100)||(51441643-51441733)
chr1 (11-55)||(8671234-8671278)
[»] chr7 (20 HSPs)
chr7 (11-100)||(33350685-33350775)
chr7 (11-100)||(36870203-36870293)
chr7 (104-148)||(11593710-11593754)
chr7 (104-148)||(36651744-36651788)
chr7 (104-148)||(38606755-38606799)
chr7 (11-100)||(11593266-11593356)
chr7 (11-100)||(46356730-46356820)
chr7 (11-100)||(49028594-49028684)
chr7 (104-148)||(31004973-31005017)
chr7 (104-148)||(33350294-33350338)
chr7 (100-148)||(34869166-34869214)
chr7 (104-148)||(36869777-36869821)
chr7 (104-148)||(37616666-37616710)
chr7 (104-148)||(43281426-43281470)
chr7 (104-148)||(46356339-46356383)
chr7 (104-148)||(48919138-48919182)
chr7 (100-154)||(418891-418945)
chr7 (104-134)||(35906703-35906733)
chr7 (11-100)||(38606351-38606441)
chr7 (100-152)||(21517809-21517861)
[»] chr6 (11 HSPs)
chr6 (100-154)||(33495943-33495997)
chr6 (104-148)||(607909-607953)
chr6 (104-148)||(5631568-5631612)
chr6 (11-100)||(9706088-9706178)
chr6 (104-148)||(5258638-5258682)
chr6 (104-148)||(9706526-9706570)
chr6 (106-148)||(14030558-14030600)
chr6 (11-44)||(5260184-5260217)
chr6 (104-148)||(10100345-10100389)
chr6 (108-148)||(20428124-20428164)
chr6 (104-148)||(30679224-30679268)
[»] scaffold0570 (1 HSPs)
scaffold0570 (104-148)||(2758-2802)
[»] chr8 (11 HSPs)
chr8 (100-148)||(4032982-4033030)
chr8 (104-148)||(36565729-36565773)
chr8 (115-154)||(10824570-10824609)
chr8 (11-100)||(36544465-36544555)
chr8 (104-154)||(37077515-37077565)
chr8 (105-154)||(43732355-43732404)
chr8 (104-148)||(39946607-39946651)
chr8 (104-148)||(42854492-42854536)
chr8 (104-154)||(30113678-30113728)
chr8 (102-151)||(13589188-13589237)
chr8 (104-148)||(36544902-36544946)
[»] scaffold0113 (1 HSPs)
scaffold0113 (17-100)||(13135-13219)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 14770041 - 14770160
Alignment:
Q  100 atcatattcaagctggg-tggttgaaatggagaagagtctaaggtgttttatgtgaaatggtaatacctctcaaattaagggtaaattttattgaacaat 198  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14770041 atcatattcaagctggggtggttgaaatggagaagagtgtaaggtgttttatgtgaaatggtaatacctctcaaattaagggtaaattttattgaacaat 14770140  T
Q  199 tgtaaaaccggcgatgttgt 218  Q
    ||||||||||||||||||||    
T  14770141 tgtaaaaccggcgatgttgt 14770160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 14769608 - 14769701
Alignment:
Q  7 caatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14769608 caatgatatgtatgagagagcatcaactagtgtgaggacacgggatggggccaccgacaatttcccaaaacaatatgattgcaccaagggtcaa 14769701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 2610274 - 2610325
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 151  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  2610274 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgttttatg 2610325  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 16292026 - 16292116
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaa-tttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| | ||||| || ||||| | |||| || ||||||| ||||||||||    
T  16292026 gatatgtatgagagagcttcgactagtgtgaggacacaggatgggactaccgaaaattttcccataacattaggattgcatcaagggtcaa 16292116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 45368156 - 45368112
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  45368156 tattcaagctgggtggttgaaatggagaagagtctcaggtgtttt 45368112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 17581215 - 17581268
Alignment:
Q  101 tcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    ||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||    
T  17581215 tcatattcaagttggatggttcaaatggagaagagtctcaggtgttttatgtga 17581268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 452154 - 452110
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  452154 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 452110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 4807342 - 4807386
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  4807342 tattcaagatgggtggttgaaatggagaagagtctcaggtgtttt 4807386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 11992638 - 11992594
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  11992638 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 11992594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 38453156 - 38453108
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||    
T  38453156 atcatattcaagctgggtggttgaaatggagaagagcctcatgtgtttt 38453108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 41197760 - 41197716
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  41197760 tattcaagttgggtggttgaaatggagaagagtctcaggtgtttt 41197716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 2609841 - 2609931
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccacc-gacaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||||||||||| | |||||||||||| | ||||||| | |||  | | ||||| | ||||||| ||||||||||||||||||    
T  2609841 gatatgtatgagagagcttcgattagtgtgaggacgcaggatgggactaccaaagattttcccataacaataggattgcaccaagggtcaa 2609931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 3865822 - 3865872
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||||||||||||||||||||||||||||||| || || |||||| |||||    
T  3865822 tattcaagctgggtggttgaaatggagaagagcctcagatgttttgtgtga 3865872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 24584575 - 24584485
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||| ||||| ||| | ||||||||| |||| | | ||||| | ||||||| ||||||||||||||||||    
T  24584575 gatatgtatgagggagcttcgactactgtgaagacgcaggatggggctaccgaagattttcccataacaataggattgcaccaagggtcaa 24584485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 38453587 - 38453497
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||||||| ||| |||||||||||||| | |||||||   |||| | | ||||| | ||||||| ||||||||||||||||||    
T  38453587 gatatgtatgagagagtttcgactagtgtgaggacgcaggatgggattaccgaagattttcccataacaataggattgcaccaagggtcaa 38453497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 135
Target Start/End: Original strand, 8180530 - 8180561
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagag 135  Q
    ||||||||||||||||||||||||||||||||    
T  8180530 tattcaagctgggtggttgaaatggagaagag 8180561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 45368594 - 45368504
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||  | ||||||||  |||| | | ||||| | ||||||| || |||||||||||||||    
T  45368594 gatatgtatgagggagcttcgactagtgtgaggatgcaggatggggataccgtagattttcccataacaataggactgcaccaagggtcaa 45368504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 452584 - 452495
Alignment:
Q  12 atatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaattt-ccgaaaacaatatgattgcaccaagggtcaa 100  Q
    ||||||||||| ||| ||| |||||||||||||| | ||||| | | |||||  |||| || | ||||||| ||||||||||||||||||    
T  452584 atatgtatgagggaggttcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaa 452495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 3244183 - 3244139
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||    
T  3244183 tattcaagctgggtggtagaaatggagatgagcctcaggtgtttt 3244139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 24584142 - 24584110
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaa 132  Q
    ||||||||||||||||||||| |||||||||||    
T  24584142 atcatattcaagctgggtggtggaaatggagaa 24584110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 33226955 - 33227003
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33226955 atcatattcaagctgggtggttgaaatggagaagagtctcaggtgtttt 33227003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 53703923 - 53704013
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||| | |||| | | |||||   ||||||| ||||||||||||||||||    
T  53703923 gatatgtatgagggagcttcgactagtgtgaggacacaggatgggactaccgaagattttcccgtaacaataggattgcaccaagggtcaa 53704013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 1777547 - 1777503
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  1777547 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 1777503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 23906833 - 23906789
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  23906833 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 23906789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 46583360 - 46583312
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||||||| || |||| ||||    
T  46583360 atcatattcaagctgggtggttgaaatggagaagagcctcaggtatttt 46583312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 1777989 - 1777894
Alignment:
Q  7 caatgatatgtatgagagagctt-caactagtgtgaggacacgggatggggccaccgacaattt-ccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||||||| |||||| ||||||||||||||||   ||||||| | |||||  |||| || | ||||||| ||||||||||||||||||    
T  1777989 caatgatatgtatgagggagctttcaactagtgtgaggacgtaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 1777894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 31960350 - 31960315
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagag 135  Q
    ||||||||||||||||||||||||||||||||||||    
T  31960350 atcatattcaagctgggtggttgaaatggagaagag 31960315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 23907271 - 23907181
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||| | | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  23907271 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaa 23907181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 435979 - 436023
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||| |||||||||||||||||||| || |||||||||    
T  435979 tattcaagctgagtggttgaaatggagaagagcctcaggtgtttt 436023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 27450705 - 27450661
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  27450705 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 27450661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 43433668 - 43433712
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||| |||||||||||||||| || |||||||||    
T  43433668 tattcaagctgggtgattgaaatggagaagagcctcaggtgtttt 43433712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 48174625 - 48174581
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  48174625 tattcaagctaggtggttgaaatggagaagagcctcaggtgtttt 48174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 48623059 - 48623015
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||||| || || |||||||||    
T  48623059 tattcaagctgggtggttgaaatggagaaaagcctcaggtgtttt 48623015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 53707544 - 53707588
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || || ||||||    
T  53707544 tattcaagctgggtggttgaaatggagaagagactcagatgtttt 53707588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 56375040 - 56375084
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||| |||||||| || |||||||||    
T  56375040 tattcaagctgggtggttgaaattgagaagagcctcaggtgtttt 56375084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 55769355 - 55769265
Alignment:
Q  7 caatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaattt-ccgaaaacaatatgattgcaccaagggt 97  Q
    ||||||||||||| || ||||||| |||||| ||||||| |  ||||| ||||| |||||||| || | ||||||| |||||||||||||||    
T  55769355 caatgatatgtat-agggagcttcgactagtttgaggacgcaagatggagccacagacaattttcccataacaataggattgcaccaagggt 55769265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 55833611 - 55833521
Alignment:
Q  7 caatgatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaattt-ccgaaaacaatatgattgcaccaagggt 97  Q
    ||||||||||||| || ||||||| |||||| ||||||| |  ||||| ||||| |||||||| || | ||||||| |||||||||||||||    
T  55833611 caatgatatgtat-agggagcttcgactagtttgaggacgcaagatggagccacagacaattttcccataacaataggattgcaccaagggt 55833521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 435545 - 435635
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| |  |||||| | |||| | | ||||| | ||||||| || |||||||||||||||    
T  435545 gatatgtatgagggagcttcgactagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggagtgcaccaagggtcaa 435635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 50286721 - 50286754
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtc 137  Q
    |||||||||||||||||||||||| |||||||||    
T  50286721 tattcaagctgggtggttgaaatgaagaagagtc 50286754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 35690055 - 35690087
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagt 136  Q
    |||||||| ||||||||||||||||||||||||    
T  35690055 tattcaagttgggtggttgaaatggagaagagt 35690087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 24177837 - 24177927
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||||| ||||||| ||||||||||||||||||    
T  24177837 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttccgataacaataggattgcaccaagggtcaa 24177927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 20318737 - 20318785
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||    
T  20318737 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 20318785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 1288558 - 1288468
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  1288558 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 1288468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 12493331 - 12493241
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  12493331 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaatattttcccataacaataggattgcaccaagggtcaa 12493241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 1275015 - 1275059
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  1275015 tattcaagctgggtggttgaaatgaagaagagcctaaggtgtttt 1275059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 10639047 - 10639091
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  10639047 tattcaagctgggtggttgaaatggagaagagccttaggtgtttt 10639091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 12492919 - 12492875
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  12492919 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 12492875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 1274578 - 1274668
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | |||||||  |||||||||||||||||    
T  1274578 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaatagaattgcaccaagggtcaa 1274668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 20318304 - 20318394
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||| ||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  20318304 gatatgtatgagggagtttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 20318394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 36200528 - 36200582
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||||||| ||| ||||||||||||||||||||||| || | |||||||||||||    
T  36200528 atcatatttaagttgggtggttgaaatggagaagagactcatgtgttttatgtga 36200582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 3394460 - 3394504
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||| ||| || |||||||||    
T  3394460 tattcaagctgggtggttgaaatggagatgagcctcaggtgtttt 3394504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 24178270 - 24178318
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||| ||||||||||||||||||||||| || | |||||||    
T  24178270 atcatattcaagttgggtggttgaaatggagaagagcctcaagtgtttt 24178318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 28977389 - 28977345
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||    
T  28977389 tattcaagctgggtggttgaaatggagaagagcctcgggtgtttt 28977345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 3301160 - 3301207
Alignment:
Q  9 atgatatgtatgagagagcttcaactagtgtgaggacacgggatgggg 56  Q
    |||||||||||||| ||||||| |||||||||||||| | ||||||||    
T  3301160 atgatatgtatgagggagcttcgactagtgtgaggacgcaggatgggg 3301207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 3096922 - 3096976
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||| ||||||| |||||||||||||||||  |||| || |||||||||||||||    
T  3096922 atcaaattcaagttgggtggttgaaatggatgagagccttaggtgttttatgtga 3096976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 20077353 - 20077299
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    ||||| |||| | ||| ||||||||||||||||||| || |||||||||||||||    
T  20077353 atcattttcaggttggatggttgaaatggagaagagcctcaggtgttttatgtga 20077299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 2076006 - 2075962
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||    
T  2076006 tattcaagttgggtggttgaaatgaagaagagcctcaggtgtttt 2075962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 3301599 - 3301643
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||| |||| ||| || |||||||||    
T  3301599 tattcaagctgggtggttgaaatagagatgagcctcaggtgtttt 3301643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 34272772 - 34272816
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| ||||||||| ||||||||||||| || |||||||||    
T  34272772 tattcaagttgggtggttaaaatggagaagagcctcaggtgtttt 34272816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 30781 - 30873
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaatc 102  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| ||||||||| || |||||||||||||||||    
T  30781 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccaaaacaataggactgcaccaagggtcaatc 30873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 31218 - 31262
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  31218 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 31262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 25191129 - 25191173
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  25191129 tattcaagctgggtggttgaaatggagaagagtctcaggtgtttt 25191173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 47542247 - 47542199
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||    
T  47542247 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 47542199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 30345277 - 30345324
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 151  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  30345277 tattcaagttgggtggttgaaatggagaagagtctcaggtgttttatg 30345324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 28245187 - 28245231
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  28245187 tattcaagctgggtggttgaaatggagaagagtctcagttgtttt 28245231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 38849844 - 38849888
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  38849844 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 38849888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 51448678 - 51448588
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| ||| |||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  51448678 gatatgtatgagggagcttcgactggtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 51448588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 52138553 - 52138591
Alignment:
Q  107 tcaagctgggtggttgaaatggagaagagtctaaggtgt 145  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  52138553 tcaagctgggtggttgaaatggagaagagtctcaggtgt 52138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 51448241 - 51448197
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||    
T  51448241 tattcaagctgggtggttgaaatggagaagagcctcgggtgtttt 51448197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 52138141 - 52138231
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | |||||||  |||||||||||| ||||    
T  52138141 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaatagaattgcaccaaggatcaa 52138231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 9258199 - 9258244
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatgggg 56  Q
    |||||||||||||||||||| |||| |||||||||||  |||||||    
T  9258199 gatatgtatgagagagcttcgactattgtgaggacacatgatgggg 9258244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 43240917 - 43240869
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||    
T  43240917 atcatattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 43240869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 22089844 - 22089888
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  22089844 tattcaagctgggtggttgaaatggagaagagtctcagatgtttt 22089888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 49347925 - 49347881
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  49347925 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 49347881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 51441300 - 51441252
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||    
T  51441300 atcatattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 51441252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 32083277 - 32083230
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 151  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||    
T  32083277 tattcaagctgggtggttgaaatggagaagagcctcaggtgttctatg 32083230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 43241350 - 43241260
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| |  |||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  43241350 gatatgtatgagggagcttcgactagtgtgaggacgcacgatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 43241260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 49348363 - 49348274
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtca 99  Q
    |||||||||||| ||||||| |||||||||||||| |  |||||| | |||| | | ||||| | ||||||| |||||||||||||||||    
T  49348363 gatatgtatgagggagcttcgactagtgtgaggacgcatgatgggactaccgaagattttcccataacaataggattgcaccaagggtca 49348274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 1210495 - 1210539
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||| ||||||| || |||||||||    
T  1210495 tattcaagctgggtggttgaaatgaagaagagcctgaggtgtttt 1210539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 8671670 - 8671714
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||| ||||||||||||| || |||||||||    
T  8671670 tattcaagctgggtggttaaaatggagaagagactcaggtgtttt 8671714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 9592484 - 9592528
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||    
T  9592484 tattcaagttgggtggttgaaatggagaagagtctcgggtgtttt 9592528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 30202662 - 30202618
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||| |||||||||||||||||||||| || |||||||||    
T  30202662 tattcaagccgggtggttgaaatggagaagagcctcaggtgtttt 30202618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 51601808 - 51601852
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||    
T  51601808 tattcaagctgggtggtggaaatagagaagagtctcaggtgtttt 51601852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 8391525 - 8391564
Alignment:
Q  109 aagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  8391525 aagctgggtggttgaaatggagaagagcctcaggtgtttt 8391564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 19936272 - 19936322
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||||||||||||||||||||||||| ||||  || | |||||||||||||    
T  19936272 tattcaagctgggtggttgaaatggataagaacctcaagtgttttatgtga 19936322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 51234360 - 51234414
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||| ||||||| |||||||||||||||||||| || || |||| ||||||||||    
T  51234360 atcaaattcaagttgggtggttgaaatggagaatagcctcaggtcttttatgtga 51234414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 51441733 - 51441643
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| | |||||||||||| |  |||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  51441733 gatatgtatgagggagcttcgattagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 51441643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 8671234 - 8671278
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggg 55  Q
    |||||||||||| ||||||| |||||||||||||| | |||||||    
T  8671234 gatatgtatgagggagcttcgactagtgtgaggacgcaggatggg 8671278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 33350775 - 33350685
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||||||||||| |||||||||| ||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  33350775 gatatgtatgagagagcttcgactagtgtgaagacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 33350685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 36870293 - 36870203
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| |||||||||||||||||||||  | ||||||||  |||| | | ||||| | ||||||| ||||||||||||||||||    
T  36870293 gatatgtatgagggagcttcaactagtgtgaggatgcaggatggggataccgcaaattttcccataacaataggattgcaccaagggtcaa 36870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 11593710 - 11593754
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  11593710 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 11593754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 36651744 - 36651788
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  36651744 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 36651788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 38606755 - 38606799
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  38606755 tattcaagctgggtggttgaaatggagaagagccttaggtgtttt 38606799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 11593266 - 11593356
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||| | | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  11593266 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaa 11593356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 46356820 - 46356730
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccacc-gacaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||| | |||  | | ||||| | ||||||| ||||||||||||||||||    
T  46356820 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggactaccaaagattttcccataacaataggattgcaccaagggtcaa 46356730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 49028594 - 49028684
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| ||||||||||||||   ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  49028594 gatatgtatgagggagcttcgactagtgtgaggacgtaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 49028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 31004973 - 31005017
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| ||||||||||||||||||||||| || |||||||||    
T  31004973 tattcaagttgggtggttgaaatggagaagagcctcaggtgtttt 31005017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 33350338 - 33350294
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  33350338 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 33350294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 34869166 - 34869214
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||| |||||||||| || ||| |||||    
T  34869166 atcatattcaagctgggtggttgaattggagaagagcctcaggcgtttt 34869214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 36869821 - 36869777
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || ||| |||||    
T  36869821 tattcaagctgggtggttgaaatggagaagagcctcaggggtttt 36869777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 37616666 - 37616710
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  37616666 tattcaagctgggtggttgaaatggagaagagcctcaagtgtttt 37616710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 43281426 - 43281470
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || ||| |||||    
T  43281426 tattcaagctgggtggttgaaatggagaagagcctcaggcgtttt 43281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 46356383 - 46356339
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| ||||||||||||||||||||||| || |||||||||    
T  46356383 tattcaagttgggtggttgaaatggagaagagcctcaggtgtttt 46356339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 48919138 - 48919182
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||| ||||||||||||||||| || |||||||||    
T  48919138 tattcaagctgggtagttgaaatggagaagagcctcaggtgtttt 48919182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 418945 - 418891
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||| ||||||||||||||| ||||||||||||||| |||  | |||||||||||    
T  418945 atcagattcaagctgggtgggtgaaatggagaagagcctagagggttttatgtga 418891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 35906733 - 35906703
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaaga 134  Q
    |||||||||||||||||||||||||||||||    
T  35906733 tattcaagctgggtggttgaaatggagaaga 35906703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 38606351 - 38606441
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | |||||||   |||| | | ||| ||| ||||||| || |||||||||||||||    
T  38606351 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgggaataccgtagatttttcgataacaataggactgcaccaagggtcaa 38606441  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 21517861 - 21517809
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgt 152  Q
    |||||||||||| |||||||||||||| |||||||| || || ||||| ||||    
T  21517861 atcatattcaagttgggtggttgaaatcgagaagagccttagatgtttaatgt 21517809  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 33495943 - 33495997
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||| |||||    
T  33495943 atcatattcaagctggatggttgaaatggagaagagtctcagatgttttgtgtga 33495997  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 607909 - 607953
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  607909 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 607953  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 5631568 - 5631612
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  5631568 tattcaagctgggtggttgaaatggagaagagtctcgggtgtttt 5631612  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 9706088 - 9706178
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||||||||| ||||||| |||||||||||||| | ||||| ||  |||| | | ||||| | |||||||||| |||||||||||||||    
T  9706088 gatatgtatgagggagcttcgactagtgtgaggacgcaggatgaggataccgtagattttcccataacaatatgactgcaccaagggtcaa 9706178  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 5258682 - 5258638
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  5258682 tattcaagctgggtggttgaaatggagaagagcctcatgtgtttt 5258638  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 9706526 - 9706570
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||||||||||||||||  | |||||||||    
T  9706526 tattcaagctgggtggttgaaatggagaagagcatcaggtgtttt 9706570  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 14030558 - 14030600
Alignment:
Q  106 ttcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||    
T  14030558 ttcaaactgggtggttgaaatggagaatagtctcaggtgtttt 14030600  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 5260217 - 5260184
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgagga 44  Q
    |||||||||||| |||||||||||||||||||||    
T  5260217 gatatgtatgagggagcttcaactagtgtgagga 5260184  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 10100389 - 10100345
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    ||||||||||||||||||| |||||||||||| || | |||||||    
T  10100389 tattcaagctgggtggttggaatggagaagagcctcatgtgtttt 10100345  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 20428164 - 20428124
Alignment:
Q  108 caagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||| ||  ||||||||    
T  20428164 caagctgggtggttgaaatggagaagagcctcgggtgtttt 20428124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 30679224 - 30679268
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| |||||||||||||| |||||||| || |||||||||    
T  30679224 tattcaagttgggtggttgaaatagagaagaggctcaggtgtttt 30679268  T

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Target: scaffold0570 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 2802 - 2758
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  2802 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 2758  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 4033030 - 4032982
Alignment:
Q  100 atcatattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  4033030 atcatattcaagttgggtggttgaaatggagaagagcctcaggtgtttt 4032982  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 36565773 - 36565729
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  36565773 tattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 36565729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 10824609 - 10824570
Alignment:
Q  115 ggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  10824609 ggtggttgaaatggagaagagtctcaggtgttttatgtga 10824570  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 36544465 - 36544555
Alignment:
Q  11 gatatgtatgagagagcttcaactagtgtgaggacacgggatggggccaccg-acaatttccgaaaacaatatgattgcaccaagggtcaa 100  Q
    ||||| |||||| ||||||| |||||||||||||| | ||||||| | |||| | | ||||| | ||||||| ||||||||||||||||||    
T  36544465 gatatatatgagggagcttcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 36544555  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 37077515 - 37077565
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||| |||||    
T  37077515 tattcaagctaagtggttgaaatggagaagagtctcaggtgttttgtgtga 37077565  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 43732355 - 43732404
Alignment:
Q  105 attcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    ||||||| |||||||||||||||||||||||||| | ||||| |||||||    
T  43732355 attcaagttgggtggttgaaatggagaagagtctcaagtgttatatgtga 43732404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 39946607 - 39946651
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||| ||||||||||||||||||| || |||||||||    
T  39946607 tattcaagctggatggttgaaatggagaagagccttaggtgtttt 39946651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 42854536 - 42854492
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||||||||||||||||||||||||||| || | |||||||    
T  42854536 tattcaagctgggtggttgaaatggagaagagcctcatgtgtttt 42854492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 30113728 - 30113678
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgttttatgtga 154  Q
    ||||||||||   |||||||||||||||||||||  |||||||||||||||    
T  30113728 tattcaagctaaatggttgaaatggagaagagtcgcaggtgttttatgtga 30113678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 13589188 - 13589237
Alignment:
Q  102 catattcaagctgggtggttgaaatggagaagagtctaaggtgttttatg 151  Q
    |||||||||| ||| ||||||||||||||||||| || | ||||||||||    
T  13589188 catattcaaggtggatggttgaaatggagaagagcctgatgtgttttatg 13589237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 36544902 - 36544946
Alignment:
Q  104 tattcaagctgggtggttgaaatggagaagagtctaaggtgtttt 148  Q
    |||||||| ||||||||||||||||| ||||| || |||||||||    
T  36544902 tattcaagttgggtggttgaaatggataagagcctcaggtgtttt 36544946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 13219 - 13135
Alignment:
Q  17 tatgagagagcttcaactagtgtgaggacacgggatggggccaccgacaattt-ccgaaaacaatatgattgcaccaagggtcaa 100  Q
    |||||| ||||||| |||||||||||||| |  |||||| | |||||  |||| || | ||||||| ||||||||||||||||||    
T  13219 tatgagggagcttcgactagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggattgcaccaagggtcaa 13135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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