View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_53 (Length: 240)
Name: NF1962_1D_low_53
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 21441352 - 21441482
Alignment:
| Q |
101 |
ttctaaataaaacataaaaaattcaaattttcaaatacaaattatatgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacata |
200 |
Q |
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| T |
21441352 |
ttctaaataaaacataaaaaattcgaattttcagatacaaattataggaataatgcacaaatttaagaaattcattctcgttcagcgtaagagacacata |
21441451 |
T |
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| Q |
201 |
cactatgaaacattgacacatacacgaacac |
231 |
Q |
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| T |
21441452 |
cactatgaaacattgacacattcacgaacac |
21441482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 21440859 - 21440967
Alignment:
| Q |
1 |
aatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactccttagtcacacatttacataccaaaatgactgttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21440859 |
aatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatgtgtctctccttagtcacacatttacataccaaaatgactgttta |
21440958 |
T |
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| Q |
101 |
ttctaaata |
109 |
Q |
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||||||||| |
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| T |
21440959 |
ttctaaata |
21440967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 21440211 - 21440383
Alignment:
| Q |
46 |
attctcaaatttgtcactccttagtcacacatttacataccaaaatgactgtttattctaaataaaacataaaaa------attcaaattttcaaataca |
139 |
Q |
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|||||||||| |||| ||| || ||||||||||||||| ||||||||| |||||||||||||| ||| | ||||| | | |||| || | |||| |
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| T |
21440211 |
attctcaaatgtgtctctcatttgtcacacatttacatgccaaaatgattgtttattctaaattaaaaaaaaaaactaaagaatttaattctccattaca |
21440310 |
T |
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| Q |
140 |
aattat---atgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacatacactatgaa |
209 |
Q |
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| |||| | ||||||||||||| ||||||||||||||||| | || | ||||| |||||||||||||||| |
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| T |
21440311 |
agttataaaaagaagaatgcacaactttaagaaattcattctattacagcttaagatacacatacactatgaa |
21440383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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