View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_56 (Length: 230)
Name: NF1962_1D_low_56
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2299422 - 2299198
Alignment:
| Q |
1 |
gaagcacgacaaaggctagatgaacaacctaaaaacaaaaatgcaagaagtataccagtactatgagcaactgtaggtaatcgccactgcataaattgtc |
100 |
Q |
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| T |
2299422 |
gaagcgcgacaaaggccagatgaacaacctaaaaacaaaaatgcaagaagtataccattactatgagcaactgtaggtaatcgccactgcataaattgtc |
2299323 |
T |
|
| Q |
101 |
accgcgagctactgccaaagtgagccaatgtagaaaatcaccaatgcgtaagttatcacggcgaacaatatgaattttagcttttataataagggatagt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2299322 |
accgcgagctactgccaaagtgagccaatggagaaaattaccaatacgtaagttatcacgacgaacaatatgaattttagcttttataataagggatagt |
2299223 |
T |
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| Q |
201 |
aacagcattaaccaaaaggtctatg |
225 |
Q |
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| || |||||||| ||||||||||| |
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| T |
2299222 |
agcaacattaaccgaaaggtctatg |
2299198 |
T |
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