View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_58 (Length: 228)
Name: NF1962_1D_low_58
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 3765994 - 3766152
Alignment:
| Q |
64 |
gcataccataacccatccccatgaatcagcaaatgatggtacatgagtcccgtatgccaccacatctgcaccaaatgcgaaagagggaacgaaaaagaaa |
163 |
Q |
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| T |
3765994 |
gcataccataacccatccccatgaatcagcaaatgatggtacatgagtcccgtatgccaccacatctgcaccaaatgcgaaagaaggaacgaaaaagaaa |
3766093 |
T |
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| Q |
164 |
accaaaagcacgtaagaaaaacatatgttagtcaaatgtcacccacgatttcatgtatt |
222 |
Q |
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| T |
3766094 |
accaaaagcacgtaagaaaaacatatgttagtcaaatgtcacccacgatttcatgtatt |
3766152 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 14944545 - 14944595
Alignment:
| Q |
5 |
catagaaatgtttcccttgttgtgttactctctccttttctttattttcct |
55 |
Q |
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| T |
14944545 |
catagaaatgtttcccttgttgtgttactctctcctttttcttattttcct |
14944595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 48388470 - 48388514
Alignment:
| Q |
67 |
taccataacccatccccatgaatcagcaaatgatggtacatgagt |
111 |
Q |
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| T |
48388470 |
taccataacccatccccaagtatcagcaaaagatggtacatgagt |
48388514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 9995225 - 9995181
Alignment:
| Q |
67 |
taccataacccatccccatgaatcagcaaatgatggtacatgagt |
111 |
Q |
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| T |
9995225 |
taccaaaacccatccccaagtatcagcaaaagatggtacatgagt |
9995181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 10359321 - 10359365
Alignment:
| Q |
67 |
taccataacccatccccatgaatcagcaaatgatggtacatgagt |
111 |
Q |
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||||| |||||||||||| | ||||||||| |||||||||||||| |
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| T |
10359321 |
taccaaaacccatccccaagtatcagcaaaagatggtacatgagt |
10359365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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