View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_61 (Length: 222)
Name: NF1962_1D_low_61
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 1792685 - 1792838
Alignment:
| Q |
22 |
cttcacccccttgattctctattctccatgaaaacccacattcttattcttcaaatgcacgcatacctaagcttgtgtgtgaatgagacattctttcttt |
121 |
Q |
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| T |
1792685 |
cttcacccccttgattctctattctccatgaaaacccacattcttattcttcaaatgcacgcatacctaagcttgtgtgtgaatgagacattctttcttt |
1792784 |
T |
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| Q |
122 |
gctatttactcagaatgttacctaccacatactgccctttaatagggattccaa |
175 |
Q |
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| T |
1792785 |
gctatttactcagaatgttacctaccatatactgcgctttaatagggattccaa |
1792838 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 44684303 - 44684257
Alignment:
| Q |
170 |
ttccaagtttcttgagatcttggaatattcttcttgattcttctcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44684303 |
ttccaagtttcttgagatcttggaatattcttcttgattcttttcag |
44684257 |
T |
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