View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_62 (Length: 218)
Name: NF1962_1D_low_62
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_62 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 10256016 - 10255818
Alignment:
| Q |
20 |
tcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttca |
119 |
Q |
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| T |
10256016 |
tcaccatcctccctcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacacccaacttcctcccctttcaacacatctatcttca |
10255917 |
T |
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| Q |
120 |
ccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatttatcaccgcgaaatccaggt |
218 |
Q |
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| T |
10255916 |
ccaccccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttccccatataatcaccatttatcaccgcgaaatccaggt |
10255818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 10238592 - 10238757
Alignment:
| Q |
20 |
tcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttca |
119 |
Q |
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| T |
10238592 |
tcaccatcttccctagccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttca |
10238691 |
T |
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| Q |
120 |
ccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttcccca |
185 |
Q |
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| T |
10238692 |
ccacccccgaaaacttcggcattggattcccaatcgccgcgtaaataaacctgtgtttcttcccca |
10238757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 10229812 - 10229977
Alignment:
| Q |
20 |
tcaccatcctccctcgccacgaaaaacggctcaccaccataacaatcctctccatacaacctacacccaacttcctcccctttcaacacatctatcttca |
119 |
Q |
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|||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
10229812 |
tcaccaccttccatcgccacgaaaaacggctcaccaccataacaaccctctccatacaacctacatccaacttcctcccctttcaacacatcaatcttca |
10229911 |
T |
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| Q |
120 |
ccacgccagaaatcttcggcattggattcccaattgccgcataaacaaacctattcttcttcccca |
185 |
Q |
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|||| || |||| ||| ||||||||||||||||| || ||||||||||||||| |||||||||||| |
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| T |
10229912 |
ccacccccgaaaactttggcattggattcccaatcgctgcataaacaaacctactcttcttcccca |
10229977 |
T |
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