View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_1D_low_64 (Length: 208)

Name: NF1962_1D_low_64

Description: NF1962_1D

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1962_1D_low_64

[»] chr2 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 169; E-Value: 8e-91

Query Start/End: Original strand, 14 - 186

Target Start/End: Complemental strand, 13281022 - 13280850

Alignment:

Q	14	acatcaccatgtatgtctaagggtgttgtgaaaaacacttcattgctcaagttgaatgacacaacatcagttttatcatttatccttcgcaaccagtgac	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13281022	acatcaccatgtatgtctaagggtgttgtgaaaaacacttcattgctcaagttgaatgacacaacatcagttttatcatttatccttcgcaaccagtgac	13280923	T

Q	114	acactccatccaagtacacctcagaactcaacgggccgtagaaaacaattagtatatcaacatcgagttttct	186	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13280922	acactccatccaagtacacctcagaactcaacgggccgtagaaaacaattggtatatcaacatcgagttttct	13280850	T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 35 - 79

Target Start/End: Original strand, 27230444 - 27230488

Alignment:

Q	35	ggtgttgtgaaaaacacttcattgctcaagttgaatgacacaaca	79	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	27230444	ggtgtagtgaaaaacacatcattggtcaagttaaatgacacaaca	27230488	T

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