View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_1D_low_65 (Length: 205)
Name: NF1962_1D_low_65
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 24385808 - 24385974
Alignment:
| Q |
18 |
tgtgaaacatataagtaaacctatacagataacagattcattttgtttatagatctatagattgatgaaagaaagaaagnnnnnnn-tttattttatttg |
116 |
Q |
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| T |
24385808 |
tgtgaaacatataagtaaacctatacagataacagattcattttgtttatagatctatagattgatgaaagaaagaaagaaaaaaaatttattttatttg |
24385907 |
T |
|
| Q |
117 |
ctcagactttatattagtggaacactttgatctcatgttgttgtggtaacactttgtatcaaccaag |
183 |
Q |
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| T |
24385908 |
ctcagactttatattagtggaacactttgatctcatgttgttgtggtaacactttgtatcaaccaag |
24385974 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 4124432 - 4124396
Alignment:
| Q |
57 |
attttgtttatagatctatagattgatgaaagaaaga |
93 |
Q |
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| T |
4124432 |
attttgtttatagatctctagattggtgaaagaaaga |
4124396 |
T |
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