View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_1D_low_8 (Length: 485)
Name: NF1962_1D_low_8
Description: NF1962_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_1D_low_8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0141 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 66 - 485
Target Start/End: Complemental strand, 4752443 - 4752026
Alignment:
| Q |
66 |
agggatttggttgattgtggtgtgtgtgcgcgcgcgttataggtggtcctgctgttggagacatacgttctaggtgtttgaggttgtctgatcaaagtac |
165 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4752443 |
agggatttggttgattgtggtgtgtg--cgcgcgcgttataggtggtcctgctgttggagacatacgttctaggtgtttgaggttgtctgatcaaagtac |
4752346 |
T |
|
| Q |
166 |
agcggaggctcttgcggttcgaaatttgcttggtcatcgtttaccacttgattctttgcaagctaaatcagaatggtaccatatttaaactctcttgctt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4752345 |
agcggaggctcttgcggttcgaaatttgcttggtcatcgtttaccacttgattctttgcaagctaaatcagaatggtaccatatttgaactctcttgctt |
4752246 |
T |
|
| Q |
266 |
ttctttcaattattgcatatatagttatggtacaagtgattatgtataaggtgtttctataacaagagacaaaatgaattaaaccggtttcatattgttt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4752245 |
ctctttcaattattgcatatatagttatggtacaagtgattatgtataaggtgtttctataacaagagacaaaatgaattaaaccggttttatattgttt |
4752146 |
T |
|
| Q |
366 |
tcatatgctattcaggacagcttattgaaataagctgaaaacacttgtggatatgtgttgtttccatatgctgttccaaacagtctcacaagtatttata |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4752145 |
tcatatgctattcaggacagcttattgaaataagctgaaaacacttgtggatatgtgttgtttccatacgctgttccaaacagtctcacaagtatttata |
4752046 |
T |
|
| Q |
466 |
cttagtagatatgctccaat |
485 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4752045 |
cttagtagatatgctccaat |
4752026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 27406050 - 27406098
Alignment:
| Q |
360 |
ttgttttcatatgctattcaggacagcttattgaaataagctgaaaaca |
408 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| |||||| |
|
|
| T |
27406050 |
ttgttttcataaactattcaggaaagcttattgaaataagctaaaaaca |
27406098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 458
Target Start/End: Complemental strand, 16457608 - 16457573
Alignment:
| Q |
423 |
ttgtttccatatgctgttccaaacagtctcacaagt |
458 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16457608 |
ttgtttccatatgctcttccaaacagtctcacaagt |
16457573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 3951876 - 3951832
Alignment:
| Q |
364 |
tttcatatgctattcaggacagcttattgaaataagctgaaaaca |
408 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
3951876 |
tttcataagctattctggacagcttatagaaataagttgaaaaca |
3951832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 37588424 - 37588376
Alignment:
| Q |
360 |
ttgttttcatatgctattcaggacagcttattgaaataagctgaaaaca |
408 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
37588424 |
ttgttttcataagttattctggagagcttatggaaataagctgaaaaca |
37588376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 40205138 - 40205090
Alignment:
| Q |
360 |
ttgttttcatatgctattcaggacagcttattgaaataagctgaaaaca |
408 |
Q |
| |
|
||||||||||| ||||| | ||| ||||||| ||||||||||||||||| |
|
|
| T |
40205138 |
ttgttttcataagctatcctggagagcttatagaaataagctgaaaaca |
40205090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 464
Target Start/End: Complemental strand, 9774 - 9732
Alignment:
| Q |
422 |
gttgtttccatatgctgttccaaacagtctcacaagtatttat |
464 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
9774 |
gttgtttccataggctctcccaaacagtctcacaagtatttat |
9732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 14548785 - 14548737
Alignment:
| Q |
360 |
ttgttttcatatgctattcaggacagcttattgaaataagctgaaaaca |
408 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
14548785 |
ttgttttcataagttattctggagagcttatggaaataagctgaaaaca |
14548737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University