View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_high_2 (Length: 321)
Name: NF1962_high_2
Description: NF1962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 26017977 - 26018238
Alignment:
| Q |
1 |
caattaattgcaatgttcttttcatgagatcaatttgctcaactatagtactattaaccgagtaactgatttagtttctcttttcaatcttgttcaggtt |
100 |
Q |
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| T |
26017977 |
caattaattgcaatgttcttttcatgagatcaatttgctcaactatagtactattaaacgagtaactgatttagtttctcttttcaatcttgttcaggtt |
26018076 |
T |
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| Q |
101 |
agtaatcaagaagctatagatcttgctggtcctttttgtgtagagagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtat |
200 |
Q |
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| T |
26018077 |
agtaatcaagaagctgtagatcttgctggtcctttatgtgtagagagcaatagacaaggatccttccaagcttgtaagaaacttgtagatttatctgtat |
26018176 |
T |
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| Q |
201 |
cgcgaggctctatcgatgatataagtgttatgatcatcaaactacaaaactacgtttgaagt |
262 |
Q |
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| T |
26018177 |
cgcgaggctctatcgatgatataagtgttatgataatcaaattacaaaactacatttgaagt |
26018238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 61 - 296
Target Start/End: Original strand, 26003301 - 26003536
Alignment:
| Q |
61 |
agtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaagaagctatagatcttgctggtcctttttgtgtagagagcaatagacaagga |
160 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||| ||||| || |||||||||||||||| |
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| T |
26003301 |
agtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagggagcaatagacaagga |
26003400 |
T |
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| Q |
161 |
tccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgatgatataagtgttatgatcatcaaactacaaaactacgtttgaa |
260 |
Q |
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| T |
26003401 |
tccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatgatcatcaaactacagaactacgtttgaa |
26003500 |
T |
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| Q |
261 |
gtttcattaaaacaagcacaaacaactaacacgaca |
296 |
Q |
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|||||||||| |||| |||| || |||||||||||| |
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| T |
26003501 |
gtttcattaatacaaacacagacgactaacacgaca |
26003536 |
T |
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