View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_low_1 (Length: 702)
Name: NF1962_low_1
Description: NF1962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Original strand, 7470956 - 7471641
Alignment:
| Q |
1 |
atgtcgaataatattaaacagagacagttttataaaaacaaaagttcagtgcaacacaaaaatgcttatactaaaagaatgacttcgtaaatcaggattc |
100 |
Q |
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|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7470956 |
atgtagaaaaatattaaacattgacagttttataaaaacaaaagttcagtgcaacacaaaaatgcttatactaaaagaatgacttcgtaaatcaggatcc |
7471055 |
T |
|
| Q |
101 |
caaattgcttgacagtaaaaagaatgtttggtacagctaaaaagaaaaatgtgagaagaacttgaacaatggcacaaatgtaattttacctgataattgt |
200 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471056 |
caaattgcttgacagtaaaaaaaatgtttggtgcagctaaaaagaaaaatgcgagaagaacttgaacaatggcacaaatgtaattttacctgataattgt |
7471155 |
T |
|
| Q |
201 |
ctgcggtgtcaaattggattcccatatttggttcaggattgatcccttccaggttgataagaacttcgtaatcctctctgtttcagaagaaaatccagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7471156 |
ctgcggtgtcaaattggattcccatatttggttcaggattgatcccttccaggttgataagaacttcgtaatcctctctgtttccgaagaaaatccagca |
7471255 |
T |
|
| Q |
301 |
gatcccaccaaaaccaagtgctgtacgtgctctgggtgctacacataaatattaaaagatatatcagaataataattattatctttttgcaagagaaaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
7471256 |
gatcccaccaaaaccaagtgctgtacgtgctctgggtgctacacataaatattaaaagatatatcagaataataagtattatctttttgaaagagaaaag |
7471355 |
T |
|
| Q |
401 |
ggaggnnnnnnnnngtccttttaatgcaatgtagaaggagattccaccttaagcgcgtatttggaagcaatataaccaccaaaagaatgccctagaagta |
500 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471356 |
ggagaaaaaaaaaagtccttttaatgcaatgtagaaggagattccaccttaagcgcgtatttggaagcaatataaccaccaaaagaatgccctagaagta |
7471455 |
T |
|
| Q |
501 |
taaaattgctcaggtttttggctttcctccattcctcaaaagaatcaatgaaccaagcctcggtttctatacagtatcaataattaatttagcattttgc |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471456 |
taaaattgctcaggtttttggctttcctccattcctcaaaagaatcaatgaaccaagcctcggtttctatacagtatcaataattaatttagcattttgc |
7471555 |
T |
|
| Q |
601 |
tttgcaacaagataaaacttttgcaatatcatattaactaactctagcattcaccttcagtgcttttgcatgtaaagtctggcctg |
686 |
Q |
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| T |
7471556 |
tttgcaacaagataaaacttttgcaatatcatattaactatctctagcattcaccttcagtgcttttgcatgtaaagtctggcctg |
7471641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 446 - 568
Target Start/End: Original strand, 52872423 - 52872545
Alignment:
| Q |
446 |
accttaagcgcgtatttggaagcaatataaccaccaaaagaatgccctagaagtataaaattgctcaggtttttggctttcctccattcctcaaaagaat |
545 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||| || || ||||| |||||| | || ||||||||||| ||||||||||| ||||||| |
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| T |
52872423 |
accttgagcgcgtatttggaagcaacataaccaccaaaagaatgtccaagcagtatgaaattggtaagatttttggcttttctccattcctcgaaagaat |
52872522 |
T |
|
| Q |
546 |
caatgaaccaagcctcggtttct |
568 |
Q |
| |
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|||||||||| ||||| |||||| |
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| T |
52872523 |
caatgaaccatgcctcagtttct |
52872545 |
T |
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