View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_low_10 (Length: 250)
Name: NF1962_low_10
Description: NF1962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8139269 - 8139028
Alignment:
| Q |
1 |
cagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139269 |
cagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagaca |
8139170 |
T |
|
| Q |
101 |
tccatcattccaaagcatagattcatcatttatacaaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacat-aaacaattag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8139169 |
tccatcattccaaagcatagattcatcatttatacaaaactgagacataattccaaagtcagccatgtattaactgatagtgcatacataaaacaattag |
8139070 |
T |
|
| Q |
200 |
atgagagccacagaaactttagaactgttacggaagaataat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139069 |
atgagagccacagaaactttagaactgttacggaagaataat |
8139028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 7499658 - 7499735
Alignment:
| Q |
25 |
aaataaatgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgagacatc |
102 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
7499658 |
aaataaatgataaagatttttagataaatgattaagatttttacttcatgatctagaaacataaaaaactgagacatc |
7499735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 7499722 - 7499834
Alignment:
| Q |
136 |
aaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacataaacaattaga-------tgagagccacagaaactttagaactgtt |
228 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
7499722 |
aaaactgagacatcattctaaaaccagccatgtattaacagatagtgcatatataaacaattagatcagacttcagagccacagaaactttagaactgtt |
7499821 |
T |
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| Q |
229 |
acggaagaataat |
241 |
Q |
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| T |
7499822 |
attgaagaataat |
7499834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 7503005 - 7503107
Alignment:
| Q |
1 |
cagaaataaatgatcaagatttttaaataaatgagaaag---atttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactgag |
97 |
Q |
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||||||||||||||||| ||||||| |||||||| || ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| | |
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| T |
7503005 |
cagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcaggatttttacttaatgatcaagaaacataaaaaactggg |
7503104 |
T |
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| Q |
98 |
aca |
100 |
Q |
| |
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||| |
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|
| T |
7503105 |
aca |
7503107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7499655 - 7499701
Alignment:
| Q |
1 |
cagaaataaatgatcaagatttttaaataaatgagaaagatttttac |
47 |
Q |
| |
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|||||||||||||| |||||||||| |||||||| ||||||||||| |
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| T |
7499655 |
cagaaataaatgataaagatttttagataaatgattaagatttttac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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