View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_low_12 (Length: 231)
Name: NF1962_low_12
Description: NF1962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 49985625 - 49985413
Alignment:
| Q |
2 |
gatttttggcctaacgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaacataatctgt |
101 |
Q |
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| T |
49985625 |
gattttgggcctaatgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaacataatctgt |
49985526 |
T |
|
| Q |
102 |
gtctactacctctgactgtttcacaaaaccaaaactgaaaaagaaactttcagcgcttaaaacctctttccaaaacccttaatcactcatacactaattc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49985525 |
gtctactacctctgactgtttcacaaaaccaaaactgaaaaagaaactttcagcgcttaaaacctctttccaaaacccttaatcactcatgcactaattc |
49985426 |
T |
|
| Q |
202 |
aaaaataattcat |
214 |
Q |
| |
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||||||||||||| |
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| T |
49985425 |
aaaaataattcat |
49985413 |
T |
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