View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1962_low_4 (Length: 433)

Name: NF1962_low_4
Description: NF1962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1962_low_4
NF1962_low_4
[»] chr3 (3 HSPs)
chr3 (1-267)||(202434-202700)
chr3 (1-184)||(206482-206666)
chr3 (301-427)||(202737-202863)
[»] chr4 (5 HSPs)
chr4 (1-267)||(6908287-6908552)
chr4 (1-216)||(44924311-44924526)
chr4 (24-184)||(6901694-6901855)
chr4 (319-427)||(6908115-6908223)
chr4 (301-329)||(6908225-6908253)
[»] chr1 (4 HSPs)
chr1 (1-159)||(29514632-29514790)
chr1 (86-190)||(43632255-43632354)
chr1 (1-82)||(43626335-43626417)
chr1 (132-216)||(43997814-43997903)
[»] chr7 (1 HSPs)
chr7 (1-86)||(24652950-24653035)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 202434 - 202700
Alignment:
Q  1 ttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  202434 ttattgtgtgaggaaatctttgctcgagacatgttgtttttgatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgatg 202533  T
Q  101 attgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttga 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  202534 attgaaccttttacttgatgctctgtgtaagagaatattatttagctgtttgatattgcttgttttgatggtatacccgtgtatccaaccgaaactttga 202633  T
Q  201 tccaactatgcttcattgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202634 tccaactatgcttcattgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag 202700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 206666 - 206482
Alignment:
Q  1 ttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga-tgatctttgtgat 99  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||| ||    
T  206666 ttattgtgtgaggaaatctttgcttgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttaaatgatctttgttat 206567  T
Q  100 aattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtat 184  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||| ||||||||    
T  206566 aattgaaccttttacttgatggtgtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtatatccgtgtat 206482  T

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Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 202737 - 202863
Alignment:
Q  301 ttgattctaaattaaggaaggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggatta 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  202737 ttgattctaaattaaggaaggaaatatgtttgattctaaattctaaagttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggatta 202836  T
Q  401 atggagactttatcattttcatctctc 427  Q
    |||||||||||||||||||||| ||||    
T  202837 atggagactttatcattttcatttctc 202863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 6908552 - 6908287
Alignment:
Q  1 ttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgata 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6908552 ttattgtgtgaggaaatctttgctcaagacatgttgtttttgatcttttcttttctaagtatta-gttttgctccaatacatttgatgatctttgtgata 6908454  T
Q  101 attgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttga 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6908453 attgaactttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttga 6908354  T
Q  201 tccaactatgcttcattgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6908353 tccaactatgcttcattgattgaagcatagttgattttgaatattagtttgattatgtgtgtaagag 6908287  T

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Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 44924526 - 44924311
Alignment:
Q  1 ttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44924526 ttattgtgtgaggaaatctttgctcgagacatgttgttttttatcctttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgata 44924427  T
Q  101 attgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttga 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||    
T  44924426 attgaaccttttacttgatgctgcgtgtaagagaatattatttagctgtttgatattgcttattttgatggtatacctgtgtatccaaccgaaactttga 44924327  T
Q  201 tccaactatgcttcat 216  Q
    ||||||||||||||||    
T  44924326 tccaactatgcttcat 44924311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 6901694 - 6901855
Alignment:
Q  24 tcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga-tgatctttgtgataattgaaccttttacttgatgct 122  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |    
T  6901694 tcgagacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttgaattatctttgttataattgaaccttttacctgatggt 6901793  T
Q  123 gtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtat 184  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||||| ||||||||    
T  6901794 gtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtatatccgtgtat 6901855  T

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Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 6908223 - 6908115
Alignment:
Q  319 aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggattaatggagactttatcattt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6908223 aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggattaatggagactttatcattt 6908124  T
Q  419 tcatctctc 427  Q
    |||| ||||    
T  6908123 tcatttctc 6908115  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 6908253 - 6908225
Alignment:
Q  301 ttgattctaaattaaggaaggaaatatgt 329  Q
    |||||||||||||||||||||||||||||    
T  6908253 ttgattctaaattaaggaaggaaatatgt 6908225  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 29514632 - 29514790
Alignment:
Q  1 ttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttgatgatctttgtgata 100  Q
    |||||||| ||| |||||||||||||||| ||||| ||||| | ||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||    
T  29514632 ttattgtgcgagtaaatctttgctcgagagatgttctttttgagcttttcttttccaagtatagagttttgctccaatacatttgatgatctttatgata 29514731  T
Q  101 attgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgc 159  Q
    |||||||||||||||| |||  || |||| ||| |||||||||||| ||||||| ||||    
T  29514732 attgaaccttttacttaatggagtttgtatgagtatattatttagcagtttgattttgc 29514790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 43632255 - 43632354
Alignment:
Q  86 atgatctttgtgataattgaaccttttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatc 185  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||     | || ||||| ||||||| |||| | |||| ||||||||||||||||||    
T  43632255 atgatctttgtgataattgaaccttttacttgatgttgtatgtaag-----aatagttagcagtttgattttgcatattttgatggtatacccgtgtatc 43632349  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 43626335 - 43626417
Alignment:
Q  1 ttattgtgtgaggaaatctttgctc-gagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacat 82  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||| |||| |||||||| || |||||||||||||||||||||||    
T  43626335 ttattgtgtaaggaaatcttttctcagagacgtgttgttttttatctcttcttttccaaatattaagttttgctccaatacat 43626417  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 43997903 - 43997814
Alignment:
Q  132 agaatattatttagctgtttgatattgcttgtttttatggtata-cccgtgtat----ccaaccgaaactttgatccaactatgcttcat 216  Q
    ||||||||||||||| ||||||| |||| | |||| |||||||| |||||||||    |||||| |||||||||  ||||||||||||||    
T  43997903 agaatattatttagcagtttgattttgcatattttgatggtataccccgtgtatccaaccaaccaaaactttgaatcaactatgcttcat 43997814  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 24652950 - 24653035
Alignment:
Q  1 ttattgtgtgaggaaatctttgctcgagacatgttgtttttaatcttttcttttctaagtattaagttttgctccaatacatttga 86  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  24652950 ttattgtgtgaggaaatctttgctcaaaacatgttgtttttgatcttttcttttccaagtattaagttttgctccaatacatttga 24653035  T

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